Data from: Sequence capture and next-generation sequencing of ultraconserved elements in a large-genome salamander

Newman CE, Austin CC

Date Published: November 10, 2016

DOI: http://dx.doi.org/10.5061/dryad.43t60

 

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Title RAxML-20percent-all
Downloaded 9 times
Description Concatenated phylip alignment for RAxML: all samples, up to 20 percent missing samples per locus
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Title RAxML-60percent-all
Downloaded 4 times
Description Concatenated phylip alignment for RAxML: all samples, up to 40 percent missing samples per locus
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Title RAxML-20percent-1k
Downloaded 6 times
Description Concatenated phylip alignment for RAxML: 1k-samples, up to 20 percent missing samples per locus
Download mafft-nexus-80-1k.phylip (51.43 Mb)
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Title RAxML-40percent-1k
Downloaded 6 times
Description Concatenated phylip alignment for RAxML: 1k-samples, up to 40 percent missing samples per locus
Download mafft-nexus-60-1k.phylip (57.52 Mb)
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Title Starbeast_BPP_informative70
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Description Alignments (nexus) for *Beast and BPP analyses: 70 most informative loci
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Title Starbeast_informative100
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Description Alignments (nexus) for *Beast analysis: 100 most informative loci
Download Starbeast_informative100.zip (146.7 Kb)
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Title Starbeast_informative50
Downloaded 8 times
Description Alignments (nexus) for *Beast analysis: 50 most informative loci
Download Starbeast_informative50.zip (73.84 Kb)
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Title Starbeast_informative20
Downloaded 10 times
Description Alignments (nexus) for *Beast analysis: 20 most informative loci
Download Starbeast_informative20.zip (29.76 Kb)
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Title Starbeast_BPP_random70_1
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Description Alignments (nexus) for *Beast and BPP analyses: 70 random loci, set 1
Download Starbeast_BPP_random70_1.zip (97.30 Kb)
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Title Starbeast_random70_2
Downloaded 9 times
Description Alignments (nexus) for *Beast analysis: 70 random loci, set 2
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Title Starbeast_random70_3
Downloaded 9 times
Description Alignments (nexus) for *Beast analysis: 70 random loci, set 3
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Title Starbeast_random70_4
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Description Alignments (nexus) for *Beast analysis: 70 random loci, set 4
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Title Starbeast_random70_5
Downloaded 8 times
Description Alignments (nexus) for *Beast analysis: 70 random loci, set 5
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Title Structure_random_allpops
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Description SNP file for Structure analyses. Population in second column.
Download Structure_random_allpops.txt (467.6 Kb)
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When using this data, please cite the original publication:

Newman CE, Austin CC (2016) Sequence capture and next-generation sequencing of ultraconserved elements in a large-genome salamander. Molecular Ecology 25(24): 6162-6174. http://dx.doi.org/10.1111/mec.13909

Additionally, please cite the Dryad data package:

Newman CE, Austin CC (2016) Data from: Sequence capture and next-generation sequencing of ultraconserved elements in a large-genome salamander. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.43t60
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