Data from: Metabarcoding reveals environmental factors influencing spatio-temporal variation in pelagic micro-eukaryotes

Brannock PM, Ortmann AC, Moss AG, Halanych KM

Date Published: May 30, 2016

DOI: http://dx.doi.org/10.5061/dryad.442dv

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Original Operational Taxonomic Unit (OTU) Table
Downloaded 11 times
Description This is the original operational taxonomic unit (OTU) table resulting from the sequences clustering prior to any filtering of OTUs.
Download otu_table_mc2_w_tax_from_biom.txt (8.747 Mb)
Download README.xlsx (13.79 Kb)
Details View File Details
Title Final Operational Taxonomic Unit (fOTU) Table
Downloaded 7 times
Description The filtered operational taxonomic unit (OTU) table that excludes OTUs that failed to align with PyNAST or were classified as Archaea and Bacteria. This OTU table corresponds to the final OTU (fOTU) table listed in the manuscript.
Download otu_table_mc2_w_tax_no_pynast_failures_ba...om.txt (12.58 Mb)
Download README.xlsx (13.79 Kb)
Details View File Details
Title Combined Operational Taxonomic Unit (OTU) Table
Downloaded 33 times
Description This operational taxonomic unit (OTU) table is the same as the final OTU (fOTU) table, EXCEPT the technical replicates have been combined into one sample. Therefore there are no A and B samples anymore and they are combined and treated as one sample.
Download otu_table_mc2_w_tax_no_pynast_failures_ba...om.txt (8.581 Mb)
Download README.xlsx (11.73 Kb)
Details View File Details
Title Representative Operational Taxonomic Unit (OTU) Sequences
Downloaded 3 times
Description The sequences used as representatives for the different operational taxonomic unit (OTU) clusters. These sequences are the most abundant sequences found within the OTU cluster. These sequences were used for taxonomic assignment and sequence alignment as stated in the manuscript. Further detail can be found in the method section of the manuscript.
Download rep_set.fna (3.585 Mb)
Details View File Details

When using this data, please cite the original publication:

Brannock PM, Ortmann AC, Moss AG, Halanych KM (2016) Metabarcoding reveals environmental factors influencing spatio-temporal variation in pelagic micro-eukaryotes. Molecular Ecology 25(15): 3593–3604. http://dx.doi.org/10.1111/mec.13709

Additionally, please cite the Dryad data package:

Brannock PM, Ortmann AC, Moss AG, Halanych KM (2016) Data from: Metabarcoding reveals environmental factors influencing spatio-temporal variation in pelagic micro-eukaryotes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.442dv
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: