Data from: Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the southeastern United States and Caribbean Islands

Kao JY, Zubair A, Salomon MP, Nuzhdin SV, Campo D

Date Published: March 31, 2015

DOI: http://dx.doi.org/10.5061/dryad.446sv.2

 

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Title Chromopainter files zipped
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Description Zipped folder containing scripts, input files, and README for running Chromopainter analysis
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Title SNPRelate_admixture
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Description R script to run PCA analysis
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Title VCFtools_Fst_LD
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Description Script to us VCFTools for generating Fst and LD values
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Title ADMIXTURE files zipped
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Description Zipped folder that contains scripts, input files, and README for performing ADMIXTURE analysis
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Title Dxy analysis files
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Title vcf SNP file for Fst, LD, and PCA analyses
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Download global.pop.GATK.SNP.hard.filters.V3.phased...cf.gz (63.67 Mb)
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Title vcf SNP file from SNP calling pipeline with no additional filters
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When using this data, please cite the original publication:

Kao JY, Zubair A, Salomon MP, Nuzhdin SV, Campo D (2015) Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the southeastern United States and Caribbean Islands. Molecular Ecology 24(7): 1499-1509. http://dx.doi.org/10.1111/mec.13137

Additionally, please cite the Dryad data package:

Kao JY, Zubair A, Salomon MP, Nuzhdin SV, Campo D (2015) Data from: Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the southeastern United States and Caribbean Islands. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.446sv.2
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