Data from: Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.)

Ma T, Ma H, Zhao H, Qi H, Zhao J

Date Published: December 16, 2014

DOI: http://dx.doi.org/10.5061/dryad.44tj3

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Phylogenetic relationship of XYLP between rice and Arabidopsis.
Downloaded 33 times
Description The unrooted phylogenetic tree of 21 OsXYLP and 13 AtXYLP proteins. Four clades of XYLPs are show on different color backgrounds. Scale bar represent 0.1 amino acid substitution per site.
Download Figure 2.jpg (1.048 Mb)
Details View File Details
Title Multiple sequence alignments of the nsLTP domain of OsXYLPs and AtXYLPs.
Downloaded 35 times
Description Identical (100%), conservative (75-99%) and block (50-74%) of similar amino acid residues are shaded in black, red and light blue, respectively.
Download Figure S1.jpg (2.340 Mb)
Details View File Details
Title Protein backbones of XYLPs in rice and Arabidopsis.
Downloaded 28 times
Download Table S1.doc (65.53 Kb)
Details View File Details
Title Protein structure of rice XYLPs.
Downloaded 31 times
Description Gray boxes indicate the secretory signal sequence predicted by SignalP. The violet boxes indicate predicted GPI-anchored signal. Dark red straights indicate glycoprotein-like Pro/Ala/Ser/Thr-rich regions (PAST>35%). Light red circles with number indicate putative AG glycomodules and its number. Yellow and black boxes indicate nsLTP domains; black boxes indicate the eight conserved cysteine residues; the numbers in yellow boxes means the number of amino acid residues; the green boxes show the hydrophobic residues between C5 and C6.
Download Figure 1 .jpg (855.0 Kb)
Details View File Details

When using this data, please cite the original publication:

Ma T, Ma H, Zhao H, Qi H, Zhao J (2014) Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC Plant Biology 14: 299. http://dx.doi.org/10.1186/s12870-014-0299-y

Additionally, please cite the Dryad data package:

Ma T, Ma H, Zhao H, Qi H, Zhao J (2014) Data from: Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.44tj3
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: