Data from: Selection from parasites favors immunogenetic diversity but not divergence among locally adapted host populations

Tobler M, Plath M, Riesch R, Schlupp I, Grasse A, Munimanda GK, Setzer C, Penn DJ, Moodley Y

Date Published: March 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.456f3.2

 

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Title 1 Parasite communities
Downloaded 69 times
Description This file includes the raw data about the occurrence of parasites across 6 sites investigated in the study. Included are data for individual hosts and counts of specific parasites as outlined in the paper. Variables include an individual identification number (which is also used for the MHC and microsatellite data), population of origin for each host individual, sex, standard length (in millimeter), as well as the number of Oodinium, Ambiphyra, Trichodina, Dactylogyrus, Gyrodactylus, Diplostomum cf. spathaceum, Echinochasmus cf. donaldsoni, Uvulifer, Trematode 1, Trematode 2, Trematode 3, Nematode, Cestode, and Lernea recorded per host.
Download 1 Parasite communities.xls (48.64 Kb)
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Title 2 Microsatellite haplotypes
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Description This file includes the raw microsatellite data of hosts investigated across 6 sites. Variables include an individual identification number, population of origin for each host individual, and allele lengths for 12 microsatellite loci of each individual host. Sequence data is available through Genbank.
Download 2 Microsatellite haplotypes.xlsx (67.87 Kb)
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Title 3 MHC haplotypes
Downloaded 95 times
Description This file includes the raw data on MHC IIB haplotypes of hosts investigated across 6 sites. Variables include an individual identification number, population of origin for each host individual, the total number of MHC IIB alleles per individual, and individual-level presence or absence information for all 81 alleles documented in the study. Sequence data is available through Genbank.
Download 3 MHC haplotypes.xls (105.9 Kb)
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Title 4 BSD temporal variation
Downloaded 70 times
Description Raw data of the presence of black spot disease (BSD; Uvulifer sp.) across a temporal series of samples from all 6 population investigated in this study. Variables included are year of collection, habitat type, population of origin, as well as the number of Uvulifer cysts and the presence or absence of Uvulifer cysts. Note that data is not available for all populations and all years (see main manuscript) and that only presence/absence data was available for some years.
Download 4 BSD temporal variation.xls (127.4 Kb)
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Title Fasta Genbank 80 MHC haplotypes
Downloaded 5 times
Description This fasta file contains the DNA sequences of the 80 unique MHC Class IIB alleles that were isolated in this study. Each of our six subpopulations have different combinations of these alleles.
Download Fasta Genbank 80 MHC haplotypes.fas (20.62 Kb)
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When using this data, please cite the original publication:

Tobler M, Plath M, Riesch R, Schlupp I, Grasse A, Munimanda GK, Setzer C, Penn DJ, Moodley Y (2014) Selection from parasites favors immunogenetic diversity but not divergence among locally adapted host populations. Journal of Evolutionary Biology 27(5): 960–974. http://dx.doi.org/10.1111/jeb.12370

Additionally, please cite the Dryad data package:

Tobler M, Plath M, Riesch R, Schlupp I, Grasse A, Munimanda GK, Setzer C, Penn DJ, Moodley Y (2014) Data from: Selection from parasites favors immunogenetic diversity but not divergence among locally adapted host populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.456f3.2
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