Data from: Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis

Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A

Date Published: February 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.4635t

 

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Title Per individual haplotypes for all RAD markers
Downloaded 10 times
Description Haplotypes produced by Stacks for all assembled RAD markers.
Download Haplotypes_all_RAD_markers.csv (2.781 Mb)
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Title Per individual read depth for all RAD markers with greater than or equal to 20x coverage
Downloaded 4 times
Description RAW reads for each individual were mapped back to the catalogue of RAD marker consensus sequences using Stampy. SAMtools was then used to generate a pileup from which read depth was extracted. RAD markers with less than 20x coverage were considered absent.
Download Read_depth_all_RAD_markers_greater_than_19x.csv (2.262 Mb)
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Title Consensus sequences for all RAD markers
Downloaded 4 times
Description Fasta file containing consensus sequences for all RAD markers de novo assembled by stacks.
Download consensus_seqs_all_RAD_markers.fa (1.619 Mb)
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When using this data, please cite the original publication:

Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A (2015) Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis. Heredity 115(1): 37-46. http://dx.doi.org/10.1038/hdy.2015.10

Additionally, please cite the Dryad data package:

Mathers TC, Hammond RL, Jenner RA, Hänfling B, Atkins J, Gómez A (2015) Data from: Transition in sexual system and sex chromosome evolution in the tadpole shrimp Triops cancriformis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4635t
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