Data from: Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers

 

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Title ann_arg_fst_map
Downloaded 15 times
Description Contains: all SNPs kept in the H. annuus - H. argophyllus comparison, name of reference gene, position of SNP in gene, genotypes of all individuals, Fst, Fit, Fis, name, linkage group, position in centimorgan, unique position on map, number of nucleotides in gene, boolean value whether SNP is in the top5% most divergent.
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Title bol_exi_fst_map
Downloaded 11 times
Description Contains: all SNPs kept in the H. exilis - H. bolanderi comparison, name of reference gene, position of SNP in gene, genotypes of all individuals, Fst, Fit, Fis, name, linkage group, position in centimorgan, unique position on map, number of nucleotides in gene, boolean value whether SNP is in the top5% most divergent.
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Title deb_pet_fst_map
Downloaded 8 times
Description Contains: all SNPs kept in the H. debilis - H. petiolaris comparison, name of reference gene, position of SNP in gene, genotypes of all individuals, Fst, Fit, Fis, name, linkage group, position in centimorgan, unique position on map, number of nucleotides in gene, boolean value whether SNP is in the top5% most divergent.
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Title unique_SNP
Downloaded 10 times
Description Contains a list of all SNPs found in either one of the three species pairs. List contains unique name (gene name and position concatenated) and the fst value for all three species pairs.
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Title unique_genes
Downloaded 13 times
Description Contains list of all unique polymorphic genes found in either of the three species pairs, and the fst value for all three species pairs.
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Title ann_arg_fst_map_dnds.out
Downloaded 9 times
Description Contains list of all polymorphic genes in H. annuus - H. argophyllus species pairs and dn, ds, dn/ds values.
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Title bol_exi_fst_map_dnds
Downloaded 12 times
Description Contains list of all polymorphic genes in H. exilis - H. bolanderi species pairs and dn, ds, dn/ds values.
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Title deb_pet_fst_map_dnds
Downloaded 10 times
Description Contains list of all polymorphic genes in H. debilis - H. petiolaris species pairs and dn, ds, dn/ds values.
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Title ann_arg_fst_map_cluster_nonoverlapping_windows
Downloaded 13 times
Description Contains list for H. annuus - H. argophyllus of all unique positions in the genetic map, linkage groups, associated fst valuse, and other various statistics (not used in this study, but part of the original script).
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Title bol_exi_fst_map_cluster_nonoverlapping_windows
Downloaded 11 times
Description Contains list for H. exilis - H. bolanderi of all unique positions in the genetic map, linkage groups, associated fst valuse, and other various statistics (not used in this study, but part of the original script).
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Title deb_pet_fst_map_cluster_nonoverlapping_windows
Downloaded 14 times
Description Contains list for H. debilis - H. petiolaris of all unique positions in the genetic map, linkage groups, associated fst valuse, and other various statistics (not used in this study, but part of the original script).
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When using this data, please cite the original publication:

Renaut S, Owens GL, Rieseberg LH (2013) Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers. Molecular Ecology 23(2): 311–324. http://dx.doi.org/10.1111/mec.12600

Additionally, please cite the Dryad data package:

Renaut S, Owens GL, Rieseberg LH (2013) Data from: Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.465v3
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