Data from: Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences

Liu S, Hansen MM, Jacobsen MW

Date Published: August 29, 2016

DOI: http://dx.doi.org/10.5061/dryad.46fb1

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title SNPs_subset
Downloaded 3 times
Description A VCF file containing a random subset (1%) of all SNPs discovered in this study. This file was used for conducting PCA and calculating nucleotide diversity.
Download SNPs_subset.vcf (109.9 Mb)
Details View File Details
Title mtDNA_alignments
Downloaded 3 times
Description The zip file contains the three mtDNA alignments used in this study. "mitogenomes.fas" is the alignment of the mitogenomes of the 81 individuals included in this study together with an outgroup. Control Region was removed from the alignment. Based on it, two other alignments, "alignment_with_1994-cytb.fas" and "alignment_with_2008-cytb.fas", were created by incorporating the data from Orti et al. (1994) and Makinen & Merila (2008), respectively.
Download mtDNA_alignments.zip (31.57 Kb)
Details View File Details

When using this data, please cite the original publication:

Liu S, Hansen MM, Jacobsen MW (2016) Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences. Molecular Ecology 25(20): 5187-5202. http://dx.doi.org/10.1111/mec.13827

Additionally, please cite the Dryad data package:

Liu S, Hansen MM, Jacobsen MW (2016) Data from: Region-wide and ecotype-specific differences in demographic histories of threespine stickleback populations, estimated from whole genome sequences. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.46fb1
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: