Data from: Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis

Lenz TL, Eizaguirre C, Rotter B, Kalbe M, Milinski M

Date Published: October 11, 2012

DOI: http://dx.doi.org/10.5061/dryad.478g5

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Lenz_SampleIdentification
Downloaded 47 times
Description Table with information on origin, treatment and attributes for each SuperSAGE library sample.
Download Lenz_SampleIdentification.txt (964 bytes)
Download README.txt (956 bytes)
Details View File Details
Title Lenz_ESTmatrix_Normalized
Downloaded 59 times
Description SuperSAGE tag count data for each detected gene and sample library. Tags are filtered according to description in the manuscript and tag count is normalized to 1 Mio tags per library. See accompanying files for sample description. Gene IDs are from ENSEMBL. Ready for input into R.
Download Lenz_ESTmatrix_Normalized.txt (447.1 Kb)
Download README.txt (956 bytes)
Details View File Details
Title Lenz_24SuperSAGElibraries
Downloaded 44 times
Description contains the 24 individual libraries with sequenced SuperSAGE tags and their frequencies.
Download Lenz_24SuperSAGElibraries.tar.gz (29.80 Mb)
Download README.txt (972 bytes)
Details View File Details
Title Lenz_MappedAssembly.fasta
Downloaded 49 times
Description contains the output of the mapping assembly of the normalized cDNA reads against the ENSEMBL transcripts
Download Lenz_MappedAssembly.fasta.gz (12.17 Mb)
Download README.txt (972 bytes)
Details View File Details
Title Lenz_ParasiteData
Downloaded 19 times
Description Parasite data for experimental fish. Tab-delimited and ready for input into R.
Download Lenz_ParasiteData.txt (4.027 Kb)
Details View File Details

When using this data, please cite the original publication:

Lenz TL, Eizaguirre C, Rotter B, Kalbe M, Milinski M (2012) Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis. Molecular Ecology 22(3): 774–786. http://dx.doi.org/10.1111/j.1365-294X.2012.05756.x

Additionally, please cite the Dryad data package:

Lenz TL, Eizaguirre C, Rotter B, Kalbe M, Milinski M (2012) Data from: Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.478g5
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: