Data from: Selecting question-specific genes to reduce incongruence in phylogenomics: a case study of jawed vertebrate backbone phylogeny

Chen M, Liang D, Zhang P

Date Published: August 17, 2015

DOI: http://dx.doi.org/10.5061/dryad.47v40

 

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Title tree_nex
Description These are trees generated from different data sets.Names were refered as corresponding data sets
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Title data_nex_new
Description These data sets were generated from genomic and transcriptomic data of jawed vertebrate. The compressed file contains data sets generated by different filtering approach,including data filtered by data completeness,alignment quality, gene informative, evolutionary rate,resolution of gene and specific data sets designed for neoaves,eutheria,teleostei questions.
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Title python_scripts
Description Custom python_scripts used in the analysis, including mutual best hit analysis, pairwise_p_distance calculator, gene_average_bootstrap_value calculator, parse_gene_tree_topology. All scripts call module of Biopython. Please install Biopython before use.
Download python_script.zip (3.588 Kb)
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Title Supplementary File Archives
Description These are supplementary tables and figures related to the paper.
Download Supplementary_files.zip (1.990 Mb)
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When using this data, please cite the original publication:

Chen MY, Liang D, Zhang P (2015) Selecting question-specific genes to reduce incongruence in phylogenomics: a case study of jawed vertebrate backbone phylogeny. Systematic Biology 64(6): 1104-1120. http://dx.doi.org/10.1093/sysbio/syv059

Additionally, please cite the Dryad data package:

Chen M, Liang D, Zhang P (2015) Data from: Selecting question-specific genes to reduce incongruence in phylogenomics: a case study of jawed vertebrate backbone phylogeny. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.47v40
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