Data from: Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium

Pengelly R, Gheyas AA, Kuo R, Mossotto E, Seaby EG, Burt DW, Ennis S, Collins A

Date Published: May 23, 2016

DOI: http://dx.doi.org/10.5061/dryad.48gp0

 

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Title Genotypes from three chicken breeds
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Description Files contain in archive Gallus_genotypes.zip contain genotype data from Pengelly et al, 2016. 'Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium'. The three breed types are in separate file: WEL - white egg layers, BEL - brown egg layers, BRO - broilers. Genotypes have been QCed, providing SNPs with an allele frequency > 5%, HWE p > 0.001, and having 95% genotyping rate accross the breed. Genotype data are provided in the PLINK format, see http://pngu.mgh.harvard.edu/~purcell/plink/index.shtml for further details including file format specifications.
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When using this data, please cite the original publication:

Pengelly RJ, Gheyas AA, Kuo R, Mossotto E, Seaby EG, Burt DW, Ennis S, Collins A (2016) Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium. Heredity 117(5): 375-382. http://dx.doi.org/10.1038/hdy.2016.47

Additionally, please cite the Dryad data package:

Pengelly R, Gheyas AA, Kuo R, Mossotto E, Seaby EG, Burt DW, Ennis S, Collins A (2016) Data from: Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.48gp0
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