Data from: Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary Ice Age events with inferred population expansions and dispersals in Japanese Apodemus

Suzuki Y, Morihiko T, Koizumi Y, Tsuchiya K, Suzuki H

Date Published: August 31, 2015

DOI: http://dx.doi.org/10.5061/dryad.4902q

 

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Title 1_Aargenteus_D-loop_YSuzuki
Downloaded 5 times
Description The sequences of the mitochondrial control region of Apodemus argenteus used for the construction of the phylogenetic tree and network.
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Title 2_Aargenteus_Cytb_YSuzuki
Downloaded 11 times
Description The mitochondrial cytochrome b gene sequences of Apodemus argenteus used for the construction of the phylogenetic tree and network.
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Title 3_Aargenteus_Cytb+D-loop_YSuzuki
Downloaded 3 times
Description The concatenated sequences of the mitochondrial controla region and cytochrome b gene of Apodemus argenteus used for the construction of the phylogenetic tree and network.
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Title 4_Aspeciosus_D-loop_YSuzuki
Downloaded 2 times
Description The mitochondrial control region sequences of Apodemus specious used for the construction of the phylogenetic tree and network.
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Title 5_Aspeciosus_Cytb_YSuzuki
Downloaded 5 times
Description The mitochondrial cytochrome b gene sequences of Apodemus specious used for the construction of the phylogenetic tree and network.
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Title 6_Aspeciosus_Cytb+d-loop_YSuzuki
Downloaded 3 times
Description The concatenated sequences of the mitochondrial control region and cytochrome b gene of Apodemus specious used for the construction of the phylogenetic tree and network.
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Title 7_Aargenteus_D-loop_Clade_I
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent clade I of the control region of Apodemus argenteus.
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Title 8_Aargenteus_D-loop_Clade_Ia-1+Ia-2
Downloaded 3 times
Description The file is formatted for Arleqin and the sequences represent clade Ia-1 and clade Ia-2 of the control region of Apodemus argenteus.
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Title 9_Aargenteus_D-loop_Clade_Ia+II
Downloaded 5 times
Description The file is formatted for Arleqin and the sequences represent clade Ia-1 and clade II of the control region of Apodemus argenteus.
Download 9_Aargenteus_D-loop_Clade_Ia+II.arp (69.93 Kb)
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Title 10_Aspeciosus_D-loop_Clade_IIabcd
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Description The file is formatted for Arleqin and the sequences represent the four subgroups of clade II of the control region of Apodemus specious.
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Title 11_Aargenteus_D-loop_I+II
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent the clades I and II of the control region of Apodemus argenteus.
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Title 12_Aargenteus_Cytb_Clade_I
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Description The file is formatted for Arleqin and the sequences represent the clade I of the control region of Apodemus argenteus.
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Title 13_Aargenteus_Cytb_Clade_Ia-1
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent clade Ia-1 of the cytochrome b gene of Apodemus argenteus.
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Title 14_Aargenteus_Cytb_Clade_Ia-2
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent clade Ia-2 of the cytochrome b gene of Apodemus argenteus.
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Title 15_Aargenteus_Cytb_Clade_Ia+II
Downloaded 3 times
Description The file is formatted for Arleqin and the sequences represent clade Ia and clade II of the cytochrome b gene of Apodemus argenteus.
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Title 16_Aspeciosus_Cytb_Clade_IIabcd
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent clade II of the cytochrome b gene of Apodemus speciosus. The sequenc data set was used as an input file for Arlequin.
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Title 17_Aargenteus_Cytb_I+II
Downloaded 3 times
Description The file is formatted for Arleqin and the sequences represent clades I and II of the cytochrome b gene of Apodemus artenteus.
Download 17_Aargenteus_Cytb_I+II.arp (154.4 Kb)
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Title 18_Aargenteus_Cytb_BEAST_YSuzuki.nex
Downloaded 8 times
Description The sequences of the cytochrome b gene of Apodemus artenteus used for the BEAST analysis.
Download 18_Aargenteus_Cytb_BEAST_YSuzuki.nex.txt (125.3 Kb)
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Title 19_Aspeciosus_Cytb_BEAST_YSuzuki.nex
Downloaded 11 times
Description The sequences of the cytochrome b gene of Apodemus specious used for the BEAST analysis.
Download 19_Aspeciosus_Cytb_BEAST_YSuzuki.nex.txt (102.1 Kb)
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Title 20_Aspeciosus_D-loop_Clade_I+II
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent clades I and II of the control region of Apodemus specious.
Download 20_Aspeciosus_D-loop_Clade_I+II.arp (69.76 Kb)
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Title 21_Aspeciosus_D-loop_Total
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent the whole data set of the control region of Apodemus specious.
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Title 22_Aspeciosus_Cytb_Clade_I+II
Downloaded 2 times
Description The file is formatted for Arleqin and the sequences represent clades I and II of the cytochrome b gene of Apodemus specious.
Download 22_Aspeciosus_Cytb_Clade_I+II.arp (147.6 Kb)
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Title 23_Aspeciosus_Cytb_Total
Downloaded 3 times
Description The file is formatted for Arleqin and the sequences represent whole data set of the cytochrome b gene of Apodemus specious.
Download 23_Aspeciosus_Cytb_Total.arp (147.5 Kb)
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Title 24_Aspeciosus_Cytb_Hokkaido
Downloaded 2 times
Description The file is formatted for Arleqin and the data represent the cytochrome b gene sequences of Apodemus specious from Hokkaido.
Download 24_Aspeciosus_Cytb_Hokkaido.arp (129.2 Kb)
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When using this data, please cite the original publication:

Suzuki Y, Morihiko T, Koizumi Y, Tsuchiya K, Suzuki H (2015) Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary Ice Age events with inferred population expansions and dispersals in Japanese Apodemus. BMC Evolutionary Biology 15: 187. http://dx.doi.org/10.1186/s12862-015-0463-5

Additionally, please cite the Dryad data package:

Suzuki Y, Morihiko T, Koizumi Y, Tsuchiya K, Suzuki H (2015) Data from: Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary Ice Age events with inferred population expansions and dispersals in Japanese Apodemus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4902q
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