Data from: Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia

Wiersma AT, Gaines TA, Preston C, Hamilton JP, Giacomini D, Buell CR, Leach JE, Westra P

Date Published: January 5, 2015

DOI: http://dx.doi.org/10.5061/dryad.4fk53

 

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Title transcripts
Downloaded 4 times
Description Fasta file containing all loci and transcripts from de novo assembly of Kochia scoparia Illumina HiSeq data using Oases.
Download transcripts.fa (122.9 Mb)
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Title pseudomolecule
Downloaded 5 times
Description Fasta file containing a pseudomolecule for the Kochia scoparia de novo transcriptome. The single longest transcript for each locus was concantenated into a single pseudomolecule to be used for RNA-Seq alignments.
Download AA_AB_AC_AD_AE_AF_01_02_33.fa (38.63 Mb)
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Title Pseudomolecule annotation
Downloaded 1 time
Description GTF version 3 annotation file for the Fasta file containing a pseudomolecule for the Kochia scoparia de novo transcriptome. The single longest transcript for each locus was concantenated into a single pseudomolecule to be used for RNA-Seq alignments.
Download AA_AB_AC_AD_AE_AF_01_02_33.gtf (6.468 Mb)
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Title Pseudomolecule annotation
Downloaded 5 times
Description GFF versoion 3 annotation for the Fasta file containing a pseudomolecule for the Kochia scoparia de novo transcriptome. The single longest transcript for each locus was concantenated into a single pseudomolecule to be used for RNA-Seq alignments.
Download AA_AB_AC_AD_AE_AF_01_02_33.gff3 (3.631 Mb)
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When using this data, please cite the original publication:

Wiersma AT, Gaines TA, Preston C, Hamilton JP, Giacomini D, Buell CR, Leach JE, Westra P (2015) Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia. Planta 241(2): 463-474. http://dx.doi.org/10.1007/s00425-014-2197-9

Additionally, please cite the Dryad data package:

Wiersma AT, Gaines TA, Preston C, Hamilton JP, Giacomini D, Buell CR, Leach JE, Westra P (2014) Data from: Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4fk53
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