Data from: Comparative genomics and transcriptomics in ants provide new insights into the evolution and function of odorant binding and chemosensory proteins

McKenzie SK, Oxley PR, Kronauer DJC

Date Published: August 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.4h56c

 

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Title ABySS_transcriptome_denovo_assembly
Downloaded 7 times
Description ABySS denovo assembly of RNAseq data from pooled adults, larvae, and eggs of Cerapachys biroi, as described in the "The genome of the clonal raider ant Cerapachys biroi", Current Biology 2014
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Title CSPs.bali-phy_consensus
Downloaded 13 times
Description Consensus of bali-phy runs for ant CSPs
Download CSPs.bali-phy_consensus.tre (3.22 Kb)
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Title CSPs.bali-phy_trees_run1.trees
Downloaded 70 times
Description Trees from bali-phy chain 1 for ant CSPs
Download CSPs.bali-phy_trees_run1.trees.zip (388.0 Mb)
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Title CSPs.bali-phy_trees_run2.trees
Downloaded 62 times
Description Trees from bali-phy chain 2 for ant CSPs
Download CSPs.bali-phy_trees_run2.trees.zip (387.7 Mb)
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Title CSPS.MAFFTv7.149.ginsi.ep0.123.aoi
Downloaded 6 times
Description MAFFT alignment of ant CSPs using the ginsi algorithm and an ep value of 0.123
Download CSPS.MAFFTv7.149.ginsi.ep0.123.aoi.fas (22.60 Kb)
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Title CSPs.MAFFTv7.149.ginsi.ep0.123.RAxML.bootstrap
Downloaded 3 times
Description RAxML bootstraps of ant CSPs aligned with MAFFT.
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Title CSPs.MAFFTv7.149.ginsi.ep0.123.RAxML.bsdraw
Downloaded 6 times
Description Maximum likelihood tree as calculated with RAxML, with bootstrap bipartitions drawn, for ant CSPs aligned with MAFFT.
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Title CSPs.signalPv4.1.MAFFTv7.149.einsi.ep0.123.bootstraps
Downloaded 3 times
Description RAxML bootstraps of MAFFT aligned ant CSPs with signal peptides trimmed using signalP
Download CSPs.signalPv4.1.MAFFTv7.149.einsi.ep0.123...trees (112.1 Kb)
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Title CSPs.signalPv4.1.MAFFTv7.149.ginsi.ep0.123
Downloaded 8 times
Description Ant CSPs with signal peptides trimmed using signalP, aligned using the MAFFT ginsi algorithm with an ep value of 0.123
Download CSPs.signalPv4.1.MAFFTv7.149.ginsi.ep0.123.fas (19.39 Kb)
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Title CSPs.signalPv4.1.MAFFTv7.149.ginsi.ep0.123.RAxML.bsdraw
Downloaded 2 times
Description RAxML maximum likelihood tree of MAFFT aligned, signalP trimmed ant CSPs with bootstrap bipartitions drawn.
Download CSPs.signalPv4.1.MAFFTv7.149.ginsi.ep0.12...aw.tre (5.789 Kb)
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Title OBPs.bali-phy_consensus
Downloaded 4 times
Description Consensus tree of bali-phy runs for ant OBPs
Download OBPs.bali-phy_consensus.tre (4.207 Kb)
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Title OBPs.bali-phy_trees_run1.trees
Downloaded 63 times
Description Trees from bali-phy chain 1 for ant OBPs
Download OBPs.bali-phy_trees_run1.trees.zip (154.8 Mb)
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Title OBPs.bali-phy_trees_run2.trees
Downloaded 61 times
Description Trees from bali-phy chain 2 for ant OBPs
Download OBPs.bali-phy_trees_run2.trees.zip (153.5 Mb)
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Title OBPs.MAFFTv1.749.einsi.aoi.RAxML.bootstrap
Downloaded 5 times
Description RAxML bootstrap trees for MAFFT alignment of ant OBPs
Download OBPs.MAFFTv1.749.einsi.aoi.RAxML.bootstrap.trees (140.2 Kb)
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Title OBPs.MAFFTv7.149.einsi.aoi
Downloaded 7 times
Description MAFFT alignment of ant OBPs using the einsi algorithm
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Title OBPs.MAFFTv7.149.einsi.aoi.RAxML.bootstrap_draw
Downloaded 6 times
Description RAxML maximum likelihood tree of MAFFT aligned ant OBPs with bootstrap bipartitions drawn
Download OBPs.MAFFTv7.149.einsi.aoi.RAxML.bootstra...aw.tre (6.954 Kb)
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Title OBPs.signalP4.1.MAFFTv7.149.einsi.aoi
Downloaded 5 times
Description MAFFT alignment of ant OBPs with signal peptides cleaved using signal P
Download OBPs.signalP4.1.MAFFTv7.149.einsi.aoi.fas (50.40 Kb)
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Title OBPs.SignalP4.1.MAFFTv7.149.einsi.aoi.RAxML.bootstrap
Downloaded 4 times
Description RAxML bootstrap trees for MAFFT aligned, signal P trimmed ant OBPs
Download OBPs.SignalP4.1.MAFFTv7.149.einsi.aoi.RAxM...trees (140.2 Kb)
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Title OBPs.SignalP4.1.MAFFTv7.149.einsi.aoi.RAxML.bsdraw
Downloaded 4 times
Description RAxML maximum likelihood tree for ant CSPs with signal peptides trimmed with signal P and then aligned with MAFFT with bootstrap bipartitions drawn
Download OBPs.SignalP4.1.MAFFTv7.149.einsi.aoi.RAx...aw.tre (6.944 Kb)
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When using this data, please cite the original publication:

McKenzie SK, Oxley PR, Kronauer DJC (2014) Comparative genomics and transcriptomics in ants provide new insights into the evolution and function of odorant binding and chemosensory proteins. BMC Genomics 15: 178. http://dx.doi.org/10.1186/1471-2164-15-718

Additionally, please cite the Dryad data package:

McKenzie SK, Oxley PR, Kronauer DJC (2014) Data from: Comparative genomics and transcriptomics in ants provide new insights into the evolution and function of odorant binding and chemosensory proteins. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4h56c
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