Data from: Population genetic structure of Oryza rufipogon and O. nivara: implications for the origin of O. nivara

Liu R, Zheng X, Zhou L, Zhou H, Ge S

Date Published: September 3, 2015

DOI: http://dx.doi.org/10.5061/dryad.4hg2p

 

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Title KS1-alignment
Downloaded 4 times
Description Aligned sequences of KS1 gene fragment from 307 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download KS1-alignment.fas (289.4 Kb)
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Title LHS1-alignment
Downloaded 5 times
Description Aligned sequences of LHS1 gene fragment from 306 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download LHS1-alignment.fas (306.4 Kb)
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Title SSII1-alignment
Downloaded 3 times
Description Aligned sequences of SSII1 gene fragment from 307 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download SSII1-alignment.fas (287.3 Kb)
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Title WAXY-alignment
Downloaded 3 times
Description Aligned sequences of WAXY gene fragment from 307 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download WAXY-alignment.fas (267.5 Kb)
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Title HD3A-alignment
Downloaded 4 times
Description Aligned sequences of HD3A gene fragment from 296 individuals of Oryza nivara and O. rufipogon and one individual of O.barthii used as outgroup.
Download HD3A-alignment.fas (179.0 Kb)
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Title GBSS-alignment
Downloaded 4 times
Description Aligned sequences of GBSS gene fragment from 294 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download GBSS-alignment.fas (134.6 Kb)
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Title NP23-alignment
Downloaded 3 times
Description Aligned sequences of NP23 gene fragment from 294 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download NP23-alignment.fas (245.6 Kb)
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Title NP39-alignment
Downloaded 4 times
Description Aligned sequences of NP39 gene fragment from 293 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download NP39-alignment.fas (164.8 Kb)
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Title NP81-alignment
Downloaded 4 times
Description Aligned sequences of NP81 gene fragment from 293 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download NP81-alignment.fas (246.8 Kb)
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Title NP122-alignment
Downloaded 3 times
Description Aligned sequences of NP122 gene fragment from 293 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download NP122-alignment.fas (211.7 Kb)
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Title NDHC_TRNV-alignment
Downloaded 4 times
Description Aligned sequences of NDHC_TRNV gene fragment from 306 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download NDHC_TRNV-alignment.fas (217.7 Kb)
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Title TRNP_RPL33-alignment
Downloaded 3 times
Description Aligned sequences of TRNP_RPL33 gene fragment from 306 individuals of Oryza nivara and O. rufipogon and two individuals of O.barthii used as outgroup.
Download TRNP_RPL33-alignment.fas (217.0 Kb)
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Title Structure_input_file
Downloaded 14 times
Download Structure_input_file.txt (233.1 Kb)
Download README.txt (293 bytes)
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When using this data, please cite the original publication:

Liu R, Zheng X, Zhou L, Zhou H, Ge S (2015) Population genetic structure of Oryza rufipogon and O. nivara: implications for the origin of O. nivara. Molecular Ecology 24(20): 5211–5228. http://dx.doi.org/10.1111/mec.13375

Additionally, please cite the Dryad data package:

Liu R, Zheng X, Zhou L, Zhou H, Ge S (2015) Data from: Population genetic structure of Oryza rufipogon and O. nivara: implications for the origin of O. nivara. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4hg2p
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