Data from: Pan-African phylogeography of a model organism, the African clawed frog “Xenopus laevis”

Furman BLS, Bewick AJ, Harrison TL, Greenbaum E, Gvoždík V, Kusamba C, Evans B

Date Published: January 13, 2015

DOI: http://dx.doi.org/10.5061/dryad.4n2c4

 

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Title mtDNA_sequence_BEASTanalysis
Downloaded 9 times
Description MtDNA nexus file
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Title mtDNA_sequence_BEASTanalysis
Downloaded 4 times
Description mtDNA sequence file; input for BEAST analysis
Download mtDNA_sequence_BEASTanalysis.xml (412.4 Kb)
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Title mtDNA_sequence_BEASTanalysis
Downloaded 7 times
Description mtDNA chronogram estimated from BEAST
Download mtDNA_sequence_BEASTanalysis.tre (170.1 Kb)
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Title DMW_sequence_BEASTanalysis
Downloaded 3 times
Description DMW nexus file
Download DMW_sequence_BEASTanalysis.nex (208.8 Kb)
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Title DMW_sequence_BEASTanalysis
Downloaded 1 time
Description DMW sequence file; input for BEAST
Download DMW_sequence_BEASTanalysis.xml (226.4 Kb)
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Title DMW_sequence_BEASTanalysis
Downloaded 5 times
Description DMW chronogram estimated from BEAST
Download DMW_sequence_BEASTanalysis.tre (103.0 Kb)
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Title STRUCTURE_Input
Downloaded 12 times
Description Structure input file
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Title TESS_fullAnalysis_Input
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Description TESS full data input file
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Title TESS_reducedSample_Input
Downloaded 6 times
Description TESS reduced sample input file
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Title Autosomal_starBEAST_analysis
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Description Autosomal *BEAST input file
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Title Autosomal_starBEAST_analysis
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Description Autosomal *BEAST chronogram
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Title BPP_sequences
Downloaded 3 times
Description BPP sequence input file
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Title BPP_lmap
Downloaded 3 times
Description BPP lmap input file
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Title BPP_Algorithm1_customPrior
Downloaded 4 times
Description BPP control file setting version 1
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Title BPP_Algorithm1_defaultPrior
Downloaded 3 times
Description BPP control file setting version 2
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Title BPP_Algorithm2_customPrior
Downloaded 3 times
Description BPP control file setting version 3
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Title BPP_Algorithm2_defaultPrior
Downloaded 4 times
Description BPP control file setting version 4
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Title AR
Downloaded 3 times
Description AR nexus file; unphased
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Title bcl9
Downloaded 2 times
Description bcl9 nexus file; unphased
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Title c7orf25
Downloaded 1 time
Description c7prf25 nexus file; unphased
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Title fem1c
Downloaded 3 times
Description fem1c nexus file; unphased
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Title mastl
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Description mastl nexus file; unphased
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Title mogA
Downloaded 3 times
Description mogA nexus file; unphased
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Title nfil3
Downloaded 4 times
Description nfil3 nexus file; unphased
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Title nufip2
Downloaded 3 times
Description nufip2 nexus file; unphased
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Title p7e4
Downloaded 3 times
Description p7e4 nexus file; unphased
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Title pigo
Downloaded 5 times
Description pigo nexus file; unphased
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Title prmt6
Downloaded 6 times
Description pmrt6 nexus file; unphased
Download prmt6.nxs (77.58 Kb)
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Title Rassf10
Downloaded 2 times
Description Raddf10 nexus file; unphased
Download Rassf10.nxs (64.93 Kb)
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Title Sugp2
Downloaded 3 times
Description sugp2 nexus file; unphased
Download Sugp2.nxs (60.95 Kb)
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Title zbed4
Downloaded 4 times
Description zbed4 nexus file; unphased
Download zbed4.nxs (60.08 Kb)
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Title znf238.2
Downloaded 1 time
Description znf238 nexus file; unphased
Download znf238.2.nxs (73.50 Kb)
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Title AR_phasedSequence
Downloaded 5 times
Description AR nexus file; phased
Download AR_phasedSequence.nxs (91.76 Kb)
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Title bcl9_phasedSequence
Downloaded 2 times
Description blc9 nexus file; phased
Download bcl9_phasedSequence.nxs (137.1 Kb)
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Title c7orf25_phasedSequence
Downloaded 5 times
Description c7orf25 nexus file; phased
Download c7orf25_phasedSequence.nxs (149.5 Kb)
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Title fem1c_phasedSequence
Downloaded 4 times
Description fem1c nexus file; phased
Download fem1c_phasedSequence.nxs (113.9 Kb)
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Title mastl_phasedSequence
Downloaded 6 times
Description mastl nexus file; phased
Download mastl_phasedSequence.nxs (138.9 Kb)
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Title mogA_phasedSequence
Downloaded 2 times
Description mpgA nexus file; phased
Download mogA_phasedSequence.nxs (170.3 Kb)
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Title nfil3_phasedSequence
Downloaded 1 time
Description nfil3 nexus file; phased
Download nfil3_phasedSequence.nxs (150.2 Kb)
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Title nufip2_phasedSequence
Downloaded 3 times
Description nufip2 nexus file; phased
Download nufip2_phasedSequence.nxs (114.9 Kb)
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Title p7e4_phasedSequence
Downloaded 2 times
Description p7e4 nexus file; phased
Download p7e4_phasedSequence.nxs (145.6 Kb)
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Title pigo_phasedSequence
Downloaded 2 times
Description pigo nexus file; phased
Download pigo_phasedSequence.nxs (135.1 Kb)
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Title prmt6_phasedSequence
Downloaded 3 times
Description pmrt6 nexus file; phased
Download prmt6_phasedSequence.nxs (157.9 Kb)
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Title Rassf10_phasedSequence
Downloaded 1 time
Description rassf10 nexus file; phased
Download Rassf10_phasedSequence.nxs (132.1 Kb)
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Title Sugp2_phasedSequence
Downloaded 2 times
Description sugp2 nexus file; phased
Download Sugp2_phasedSequence.nxs (122.2 Kb)
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Title zbed4_phasedSequence
Downloaded 1 time
Description zbed4 nexus file; phased
Download zbed4_phasedSequence.nxs (120.4 Kb)
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Title znf238.2_phasedSequence
Downloaded 3 times
Description znf238.2 nexus file; phased
Download znf238.2_phasedSequence.nxs (148.0 Kb)
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When using this data, please cite the original publication:

Furman BLS, Bewick AJ, Harrison TL, Greenbaum E, Gvoždík V, Kusamba C, Evans B (2015) Pan-African phylogeography of a model organism, the African clawed frog “Xenopus laevis”. Molecular Ecology 24(4): 909-925. http://dx.doi.org/10.1111/mec.13076

Additionally, please cite the Dryad data package:

Furman BLS, Bewick AJ, Harrison TL, Greenbaum E, Gvoždík V, Kusamba C, Evans B (2015) Data from: Pan-African phylogeography of a model organism, the African clawed frog “Xenopus laevis”. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4n2c4
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