Data from: SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation

Li C, Waldbieser G, Bosworth B, Beck BH, Thongda W, Peatman E

Date Published: June 3, 2014

DOI: http://dx.doi.org/10.5061/dryad.4nf1c

 

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Title SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation
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Description The SNPs were called by TASSEL 4.0 after mapping the GBS raw reads to the blue catfish genome by BWA. The VCF file holding SNP information that retains information on depth of coverage for each allele, contains all raw SNP calls.
Download all.mergedSNPs.vcf (120.7 Mb)
Download README.docx (15.04 Kb)
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When using this data, please cite the original publication:

Li C, Waldbieser G, Bosworth B, Beck BH, Thongda W, Peatman E (2014) SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation. Molecular Ecology Resources 14(6): 1261-1270. http://dx.doi.org/10.1111/1755-0998.12272

Additionally, please cite the Dryad data package:

Li C, Waldbieser G, Bosworth B, Beck BH, Thongda W, Peatman E (2014) Data from: SNP discovery in wild and domesticated populations of blue catfish, Ictalurus furcatus, using genotyping-by-sequencing and subsequent SNP validation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4nf1c
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