Data from: Genetic diversity does not explain variation in extra-pair paternity in multiple populations of a songbird

Liu IA, Johndrow JE, Abe J, Lüpold S, Yasukawa K, Westneat DF, Nowicki S

Date Published: April 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.4nj00

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title IAL_gen_diversity_bootstrap
Downloaded 6 times
Description R script using the bootstrap to estimate three measures of genetic diversity (allelic diversity, Shannon diversity, and expected heterozygosity). Requires IAL_popsim.R and an input file of microsatellite genotypes (IAL_RWBL_genotypes.csv). Written by J. Johndrow.
Download IAL_gen_diversity_bootstrap.R (4.408 Kb)
Details View File Details
Title IAL_popsim
Downloaded 6 times
Description R function needed for IAL_gen_diversity_bootstrap.R. Written by J. Johndrow.
Download IAL_popsim.R (832 bytes)
Details View File Details
Title IAL_random_effects_model
Downloaded 5 times
Description R script generating random-effects model. Requires input file of extra-pair paternity rates (IAL_RWBL_EPP_allpops.csv). Written by J. Johndrow.
Download IAL_random_effects_model.R (1.727 Kb)
Details View File Details
Title IAL_RWBL_BahMIPA_nest_genotypes
Downloaded 42 times
Description Genotypes of female, social male, and chicks at nests sampled in the Bahamas, Michigan, and Pennsylvania. These data were used to measure extra-pair paternity (EPP) in the three populations.
Download IAL_RWBL_BahMIPA_nest_genotypes.xlsx (57.67 Kb)
Details View File Details
Title IAL_RWBL_EPP_allpops
Downloaded 7 times
Description Extra-pair paternity (EPP) data for all eight populations, as measured by number of extra-pair young and number of nests containing at least one extra-pair young. "0" and "1" indicate a negative and positive response, respectively.
Download IAL_RWBL_EPP_allpops.csv (26.59 Kb)
Details View File Details
Title IAL_RWBL_genotypes
Downloaded 2 times
Description Genotypes of ten microsatellite loci for 307 red-winged blackbirds across eight populations.
Download IAL_RWBL_genotypes.csv (26.73 Kb)
Details View File Details
Title IAL_RWBL_ND2_sequences
Downloaded 6 times
Description Sequence data for the ND2 region of mtDNA for 28 individuals (14 from the Bahamas populations and two each from the seven continental populations).
Download IAL_RWBL_ND2_sequences.nex (31.88 Kb)
Details View File Details
Title IAL_RWBL_Structure_mainparams
Downloaded 2 times
Description Main parameters file for Structure runs.
Download IAL_RWBL_Structure_mainparams.txt (1.029 Kb)
Details View File Details

When using this data, please cite the original publication:

Liu IA, Johndrow JE, Abe J, Lüpold S, Yasukawa K, Westneat DF, Nowicki S (2015) Genetic diversity does not explain variation in extra-pair paternity in multiple populations of a songbird. Journal of Evolutionary Biology 28(5): 1156-1169. http://dx.doi.org/10.1111/jeb.12644

Additionally, please cite the Dryad data package:

Liu IA, Johndrow JE, Abe J, Lüpold S, Yasukawa K, Westneat DF, Nowicki S (2015) Data from: Genetic diversity does not explain variation in extra-pair paternity in multiple populations of a songbird. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4nj00
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: