Data from: Correlated evolution of senescence and ephemeral substrate use in the Sordariomycetes

Geydan TD, Debets AJM, Verkleij GJM, van Diepeningen AD

Date Published: March 2, 2012

DOI: http://dx.doi.org/10.5061/dryad.4q34p37b

 

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Title Alignment ITS sequences
Downloaded 25 times
Description Fasta (txt) file with all the aligned ITS sequences of all strains from our culture collection and isolated from dung, used in the analysis to detect correlated evolution between substrate and (rapid) senescence.
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Title Alignment non-redundant ITS sequences
Downloaded 23 times
Description Fasta (txt) file with the aligned non-redundant ITS sequences, used in the analysis to detect correlated evolution between substrate and (rapid) senescence.
Download Alignment non-redundant ITS sequences.txt (34.00 Kb)
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Title Character matrix-non-redundant scenario
Downloaded 52 times
Description Binomic character matrix of the strains used in the non-redundant scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
Download Character matric-non-redundant scenario.pdf (6.889 Kb)
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Title Character matrix-best scenario
Downloaded 25 times
Description Binomic character matrix of the strains used in the 'best case' scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
Download Character matrix-best scenario.pdf (8.487 Kb)
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Title Character matrix-final scenario
Downloaded 21 times
Description Binomic character matrix of the strains used in the final scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
Download Character matrix-final scenario.pdf (8.446 Kb)
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Title Character matrix-worst case scenario
Downloaded 12 times
Description Binomic character matrix of the strains used in the 'worst case' scenario; Character states: Ephemeral substrate: 1=ephemeral substrate, 0= non-ephemeral substrate; Senescence:1=(rapid) senescence, 0= not senescent within 8 weeks of growth (pdf-file).
Download Character matrix-worst case scenario.pdf (8.493 Kb)
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Title Tree-all Most Parsimonious ITS trees all
Downloaded 13 times
Description All most Parsimonious trees based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps).
Download Tree-all Most Parsimonious ITS trees all.nwk (87.06 Kb)
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Title Tree-all Most Parsimonious trees non-redundant
Downloaded 16 times
Description All most Parsimonious trees based on the ITS sequences of non-redundant strains. In newick format (Mega5; 1000 bootstraps).
Download Tree-all Most Parsimonious trees non-redundant.nwk (25.24 Kb)
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Title Tree-Maximum Likelihood ITS non-redundant
Downloaded 13 times
Description Maximum Likelihood tree based on the ITS sequences of the non-redundant strains. In newick format (Mega5; 1000 bootstraps).
Download Tree-Maximum Likelihood ITS non-redundant.nwk (2.604 Kb)
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Title Tree-Maximum Likelihood ITS tree all
Downloaded 14 times
Description Maximum Likelihood tree based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps).
Download Tree-Maximum Likelihood ITS tree all.nwk (3.404 Kb)
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Title Tree-Minimum Evolution ITS Tree all
Downloaded 14 times
Description Minimum Evolution tree based on the ITS sequences of all strains. In newick format (Mega5; 1000 bootstraps).
Download Tree-Minimum Evolution ITS Tree all.nwk (3.407 Kb)
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Title Tree-Minimum Evolution non-redundant
Downloaded 15 times
Description Minimum Evolution tree based on the ITS sequences of the non-redundant strains. In newick format (Mega5; 1000 bootstraps).
Download Tree-Minimum Evolution non-redundant.nwk (2.509 Kb)
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When using this data, please cite the original publication:

Geydan TD, Debets AJM, Verkleij GJM, van Diepeningen AD (2012) Correlated evolution of senescence and ephemeral substrate use in the Sordariomycetes. Molecular Ecology 21(11): 2816-2828. http://dx.doi.org/10.1111/j.1365-294X.2012.05569.x

Additionally, please cite the Dryad data package:

Geydan TD, Debets AJM, Verkleij GJM, van Diepeningen AD (2012) Data from: Correlated evolution of senescence and ephemeral substrate use in the Sordariomycetes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4q34p37b
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