Data from: Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR

Date Published: December 5, 2014

DOI: http://dx.doi.org/10.5061/dryad.4r267

 

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Title tpc130112_SupplementalDS1
Downloaded 6 times
Description Supplemental Dataset 1: Morphometric traits for >55,000 leaflets analyzed in this study. For each leaflet, the corresponding file name (“file”), experiment from which it is derived (“experiment”), genotype (“genotype”), leaf number if applicable (“leaf”), leaflet type (“leaflet_type”, where “t” = terminal leaflet, “a” = left distal lateral leaflet, “b” = right distal lateral leaflet, “c” = left proximal lateral leaflet, “d” = right proximal lateral leaflet), proximal-distal position (“prox_dist”), age of the plant sampled (“age”, which is measured as leaf plus flower number for the chamber experiment and leaf number for the wild species experiment), whether the leaflet is on the left or right side of the leaf (“left_right”), light treatment (“trt”, where “l” = low red-to-far red, or simulated foliar shade, and “h” = high red-to-far red, or simulated sun), and trait values for circularity (“circ”), aspect ratio (“ar”), roundness (“round”), solidity (“solid”), allPCs, and asymPCs are given.
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Title tpc130112_SupplementalDS2
Downloaded 8 times
Description Supplemental Dataset 2: Heteroblasty and experimental design information for S. lycopersicum, S. pennellii, and IL leaflets measured in the chamber experiment. For each leaflet is provided the corresponding image file name (“file”), the trait for which hPCs and other information is calculated (“trait”), the mean value of the trait for the plant across the leaflets considered (“mean”), the value of the trait for specific leaflets (terminal leaflet 1, “lft_1t”; mean distal lateral leaflets 2, “lft_2ab”; terminal leaflet 2, “lft_2t”; mean distal lateral leaflets 3, “lft_3ab”; terminal leaflet 3, “lft_3t”; mean distal lateral leaflets 4, “lft_4ab”; terminal leaflet 4, “lft_4t”), hPC values, replicate (“rep”), light treatment (“trt”, where “H” = simulated foliar shade, “U” = simulated sun), shelf (“shelf”), tray (“tray”), tray position (“position”), IL genotype (“geno”), species or IL information (“species”), the number of leaves and leaf primordia at the time of harvest (“lfn”), the number of flower and floral primordia at the time of harvest (“flwrn”), and the leaf plus flower number (“lf.flow.number”).
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Title tpc130112_SupplementalDS3
Downloaded 8 times
Description Supplemental Dataset 3: hPC variance values. The fraction of shape variance in leaflets across the heteroblastic series explained by hPCs for each shape attribute is provided.
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Title tpc130112_SupplementalDS4
Downloaded 6 times
Description Supplemental Dataset 4: Loading values for cfPCA. Provided are the loading values of different traits for cfPCs. See text for details.
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When using this data, please cite the original publication:

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR (2014) Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context. The Plant Cell 26(9): 3616-3629. http://dx.doi.org/10.1105/tpc.114.130112

Additionally, please cite the Dryad data package:

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR (2014) Data from: Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4r267
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