Data from: Transcriptomic resources for an endemic Neotropical plant lineage (Gesneriaceae)

Serrano-Serrano ML, Marcionetti A, Perret M, Salamin N

Date Published: April 12, 2017

DOI: http://dx.doi.org/10.5061/dryad.4r5p1

 

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Title Trimmed_SE_Trinity
Downloaded 37 times
Description Fasta file with the Trinity assembly for Sinningia eumorpha
Download Trimmed_SE_Trinity.fasta (430.8 Mb)
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Title Trimmed_SM_Trinity
Downloaded 10 times
Description Fasta file with Trinity assembly for Sinningia magnifica
Download Trimmed_SM_Trinity.fasta (374.7 Mb)
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Title newBLASTX_allgenesSESM
Downloaded 16 times
Description BlastX for all genes assembled for S. eumorpha (SE_) and S. magnifica (SM_)
Download newBLASTX_allgenesSESM.txt (78.91 Mb)
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Title newBLASTP_allgenes_SESM
Downloaded 17 times
Description BlastP for all genes assembled for S. eumorpha (SE_) and S. magnifica (SM_)
Download newBLASTP_allgenes_SESM.txt (52.47 Mb)
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Title ORF_SESM_CDS
Downloaded 11 times
Description Fasta file with the predicted ORF (Open Reading Frame) in S. eumorpha and S. magnifica
Download ORF_SESM_CDS.fasta (284.8 Mb)
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Title OrthGroups_SE_SM
Downloaded 25 times
Description OrthoMLC ortholog groups between S. eumorpha and S. magnifica. Input file the predicted ORF.
Download OrthGroups_SE_SM.txt (1.562 Mb)
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Title ORF_SE_SM_CDS.fasta
Downloaded 15 times
Description Predicted SSR makers (Single Sequence Repeat) in S. eumorpha and S. magnifica. Input file the predicted ORF.
Download ORF_SE_SM_CDS.fasta.misa (717.6 Kb)
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When using this data, please cite the original publication:

Serrano-Serrano ML, Marcionetti A, Perret M, Salamin N (2017) Transcriptomic resources for an endemic Neotropical plant lineage (Gesneriaceae). Applications in Plant Sciences 5(4): 1600135. http://dx.doi.org/10.3732/apps.1600135

Additionally, please cite the Dryad data package:

Serrano-Serrano ML, Marcionetti A, Perret M, Salamin N (2017) Data from: Transcriptomic resources for an endemic Neotropical plant lineage (Gesneriaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4r5p1
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