Data from: An holistic ecological analysis of the diet of Cory’s shearwaters using prey morphological characters and DNA barcoding

Alonso H, Granadeiro JP, Waap S, Xavier J, Symondson WOC, Ramos JA, Catry P

Date Published: May 1, 2014

DOI: http://dx.doi.org/10.5061/dryad.4rj2s

 

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Title Database 1
Downloaded 52 times
Description This file contains all the information from the individual diet samples of Cory's shearwaters analyzed, including morphological and genetic identifications of prey (and respective Genbank accession numbers).
Download Database 1.xls (321.0 Kb)
Download README.txt (510 bytes)
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Title Database 2
Downloaded 66 times
Description This file includes the dataset used to calculate the frequencies of occurrence and numerical frequencies of prey (See the Results section and the Table 2) and to build the figures 2 and 3.
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Download README.txt (419 bytes)
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Title Frequency_of_Occurence_Alonso_et_al
Downloaded 10 times
Description This file contains the dataset used to perform all the analyses with the R Program (See Table 3 and Results subsections: "Diet of non-breeders", "Sex and inter-annual variations in diet", "Seasonal variations in diet").
Download Frequency_of_Occurence_Alonso_et_al.csv (75.87 Kb)
Download README.txt (419 bytes)
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Title GLM_Analysis_Table3_Adonis
Downloaded 18 times
Description This file contains the R-codes and scripts used in the analysis present on Table 3 and Results subsections ("Diet of non-breeders", "Sex and inter-annual variations in diet", "Seasonal variations in diet".
Download GLM_Analysis_Table3_Adonis.R (5.501 Kb)
Download README.txt (419 bytes)
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Title Alignment_Carangidae
Downloaded 8 times
Description File containing alignment run in Clustal W
Download Alignment_Carangidae.fasta (5.776 Kb)
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Title Alignment_Exocoetidae
Downloaded 5 times
Description File containing alignment run in Clustal W
Download Alignment_Exocoetidae.fasta (16.36 Kb)
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Title Alignment_Halosauridae
Downloaded 6 times
Description File containing alignment run in Clustal W
Download Alignment_Halosauridae.fasta (4.212 Kb)
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Title Alignment_Histioteuthidae
Downloaded 5 times
Description File containing alignment run in Clustal W
Download Alignment_Histioteuthidae.fasta (3.702 Kb)
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Title Alignment_Myctophidae
Downloaded 5 times
Description File containing alignment run in Clustal W
Download Alignment_Myctophidae.fasta (12.72 Kb)
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Title Alignment_Ommastrephidae
Downloaded 5 times
Description File containing alignment run in Clustal W
Download Alignment_Ommastrephidae.fasta (8.537 Kb)
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Title Alignment_Sternoptychidae
Downloaded 4 times
Description File containing alignment run in Clustal W
Download Alignment_Sternoptychidae.fasta (7.332 Kb)
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Title Alignment_Synaphobranchidae
Downloaded 4 times
Description File containing alignment run in Clustal W
Download Alignment_Synaphobranchidae.fasta (5.151 Kb)
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Title Alignment_Trichiuridae
Downloaded 6 times
Description File containing alignment run in Clustal W
Download Alignment_Trichiuridae.fasta (4.741 Kb)
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Title NJTree_Carangidae
Downloaded 4 times
Description Tree file constructed in Mega 6
Download NJTree_Carangidae.nwk (663 bytes)
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Title NJTree_Exocoetidae
Downloaded 6 times
Description Tree file constructed in Mega 6
Download NJTree_Exocoetidae.nwk (2.086 Kb)
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Title NJTree_Halosauridae
Downloaded 5 times
Description Tree file constructed in Mega 6
Download NJTree_Halosauridae.nwk (398 bytes)
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Title NJTree_Histioteuthidae
Downloaded 6 times
Description Tree file constructed in Mega 6
Download NJTree_Histioteuthidae.nwk (399 bytes)
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Title NJTree_Myctophidae
Downloaded 8 times
Description Tree file constructed in Mega 6
Download NJTree_Myctophidae.nwk (1.536 Kb)
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Title NJTree_Ommastrephidae
Downloaded 8 times
Description Tree file constructed in Mega 6
Download NJTree_Ommastrephidae.nwk (1.151 Kb)
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Title NJTree_Sternoptychidae
Downloaded 3 times
Description Tree file constructed in Mega 6
Download NJTree_Sternoptychidae.nwk (738 bytes)
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Title NJTree_Synaphobranchidae
Downloaded 3 times
Download NJTree_Synaphobranchidae.nwk (461 bytes)
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Title NJTree_Trichiuridae
Downloaded 4 times
Download NJTree_Trichiuridae.nwk (460 bytes)
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Title Tree
Downloaded 7 times
Description Tree file run in POY
Download Tree.tre (3.034 Kb)
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Title POYAlignment
Downloaded 5 times
Description Alignments between reference and sample sequences to produce a tree in POY
Download POYAlignment.fas (41.87 Kb)
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Title BootstrapTree
Downloaded 5 times
Description Bootstrap tree consensus file produced in POY
Download BootstrapTree.txt (3.702 Kb)
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When using this data, please cite the original publication:

Alonso H, Granadeiro JP, Waap S, Xavier J, Symondson WOC, Ramos JA, Catry P (2014) An holistic ecological analysis of the diet of Cory’s shearwaters using prey morphological characters and DNA barcoding. Molecular Ecology 23(15): 3719-3733. http://dx.doi.org/10.1111/mec.12785

Additionally, please cite the Dryad data package:

Alonso H, Granadeiro JP, Waap S, Xavier J, Symondson WOC, Ramos JA, Catry P (2014) Data from: An holistic ecological analysis of the diet of Cory’s shearwaters using prey morphological characters and DNA barcoding. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4rj2s
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