Data from: The genome of the yellow potato cyst nematode Globodera rostochiensis reveals insights into the basis of parasitism and virulence

Eves-van den Akker S, Laetsch D, Thorpe P, Lilley C, Danchin E, Da Rocha M, Rancurel C, Holroyd N, Cotton J, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe M, Boyes I, Marvin J, Jones L, Yusup H, Lafond-Lapalme J, Esquibet M, Sabeh M, Rott M, Overmars H, Finkers-Tomczak A, Smant G, Koutsovoulos G, Blok V, Mantelin S, Cock P, Phillips W, Henrissat B, Urwin P, Blaxter M, Jones J

Date Published: May 11, 2016

DOI: http://dx.doi.org/10.5061/dryad.4s5r6

 

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Title Clusters and normalized expression tables
Downloaded 13 times
Description For each gene, lists the normalized expression data for each life stage, and (if significantly differentially expressed) which expression super cluster it is grouped into.
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Title nGr.v1.0.annotation+TE
Downloaded 7 times
Description GFF file with locations of all gene calls in the G. rostochiensis genome and all transposable element predictions.
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Title nGr.v1.0.blast2go
Downloaded 2 times
Description blast2go annotation as gff3 file
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Title nGr.v1.0.blast2go.txt
Downloaded 12 times
Description blast2go annotation as gzipped text file
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Title nGr.v1.0.iprscan.xml
Downloaded 8 times
Description inter pro scan as gzipped xml
Download nGr.v1.0.iprscan.xml.gz (13.74 Mb)
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Title nGr.v1.0.iprscan.xml
Downloaded 6 times
Description interproscan as tsv
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Title Gr_pops.new.vs.nGr.v1.1.GQ.vcf.norm.filtered.vcf.snpeff.vcf.gz.data.txt
Downloaded 7 times
Description snpeff parsed vcf for G. rostochiensis pathotypes Ro1, 2, 3, 4, 5.
Download Gr_pops.new.vs.nGr.v1.1.GQ.vcf.norm.filter...xt.gz (10.28 Mb)
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Title Gr_pops.new.vs.nGr.v1.1.GQ.vcf.norm.filtered.vcf.snpeff.vcf
Downloaded 2 times
Description Raw VCF for G. rostochiensis pathotypes Ro1, 2, 3, 4, 5.
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When using this data, please cite the original publication:

Eves-van den Akker S, Laetsch D, Thorpe P, Lilley C, Danchin E, Da Rocha M, Rancurel C, Holroyd N, Cotton J, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe M, Boyes I, Marvin J, Jones L, Yusup H, Lafond-Lapalme J, Esquibet M, Sabeh M, Rott M, Overmars H, Finkers-Tomczak A, Smant G, Koutsovoulos G, Blok V, Mantelin S, Cock P, Phillips W, Henrissat B, Urwin P, Blaxter M, Jones J (2016) The genome of the yellow potato cyst nematode Globodera rostochiensis reveals insights into the basis of parasitism and virulence. Genome Biology 17: 124. http://dx.doi.org/10.1186/s13059-016-0985-1

Additionally, please cite the Dryad data package:

Eves-van den Akker S, Laetsch D, Thorpe P, Lilley C, Danchin E, Da Rocha M, Rancurel C, Holroyd N, Cotton J, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe M, Boyes I, Marvin J, Jones L, Yusup H, Lafond-Lapalme J, Esquibet M, Sabeh M, Rott M, Overmars H, Finkers-Tomczak A, Smant G, Koutsovoulos G, Blok V, Mantelin S, Cock P, Phillips W, Henrissat B, Urwin P, Blaxter M, Jones J (2016) Data from: The genome of the yellow potato cyst nematode Globodera rostochiensis reveals insights into the basis of parasitism and virulence. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4s5r6
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