Data from: Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis

Li J, Harata-Lee Y, Denton MD, Feng Q, Rathjen JR, Qu Z, Adelson DL

Date Published: August 30, 2017

DOI: https://doi.org/10.5061/dryad.4sf85

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Title Sequences of leaf UniTransModels from Astragalus membranaceus (Huangqi)
Downloaded 13 times
Description This FASTA format file contains sequences of Unique Transcription Models (UniTransModel) from the leaf tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology.
Download leaf.UniTransModel.fa (82.03 Mb)
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Title Sequences of root UniTransModels from Astragalus membranaceus (Huangqi)
Downloaded 14 times
Description This FASTA format file contains sequences of Unique Transcription Models (UniTransModel) from the root tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology.
Download root.UniTransModel.fa (61.84 Mb)
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Title Sequences of isoforms of leaf UniTransModels from Astragalus membranaceus (Huangqi)
Downloaded 10 times
Description This FASTA format file contains sequences of transcription isoforms of Unique Transcription Models (UniTransModel) from the leaf tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology.
Download leaf.UniTransModel.isoforms.fa (133.4 Mb)
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Title Sequences of isoforms of root UniTransModels from Astragalus membranaceus (Huangqi)
Downloaded 8 times
Description This FASTA format file contains sequences of transcription isoforms of Unique Transcription Models (UniTransModel) from the root tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology.
Download root.UniTransModel.isoforms.fa (92.69 Mb)
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Title Sequences of leaf lncRNAs from Astragalus membranaceus (Huangqi)
Downloaded 6 times
Description This FASTA format file contains sequences of long non-coding RNAs (lncRNA) from the leaf tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology.
Download leaf.lncRNA.fa (371.6 Kb)
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Title Sequences of root lncRNAs from Astragalus membranaceus (Huangqi)
Downloaded 6 times
Description This FASTA format file contains sequences of long non-coding RNAs (lncRNA) from the root tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology.
Download root.lncRNA.fa (297.1 Kb)
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Title Sequences of ROIs for 1-2 kb long leaf mRNAs from Astragalus membranaceus (Huangqi)
Downloaded 9 times
Description This FASTQ format file contains raw sequences of Read Of Inserts (ROI) of the size selected 1-2 kb long mRNAs from leaf tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology. Three SMRT cells were used for this size range.
Download Leaf_1-2k.3cell.roi.fq.gz (207.3 Mb)
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Title Sequences of ROIs for 2-3 kb long leaf mRNAs from Astragalus membranaceus (Huangqi)
Downloaded 6 times
Description This FASTQ format file contains raw sequences of Read Of Inserts (ROI) of the size selected 2-3 kb long mRNAs from leaf tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology. Five SMRT cells were used for this size range.
Download Leaf_2-3k.5cell.roi.fq.gz (463.4 Mb)
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Title Sequences of ROIs for 1-2 kb long root mRNAs from Astragalus membranaceus (Huangqi)
Downloaded 5 times
Description This FASTQ format file contains raw sequences of Read Of Inserts (ROI) of the size selected 1-2 kb long mRNAs from root tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology. Three SMRT cells were used for this size range.
Download Root_1-2k.3cell.roi.fq.gz (203.0 Mb)
Details View File Details
Title Sequences of ROIs for 2-3 kb long root mRNAs from Astragalus membranaceus (Huangqi)
Downloaded 5 times
Description This FASTQ format file contains raw sequences of Read Of Inserts (ROI) of the size selected 2-3 kb long mRNAs from root tissue of Astragalus membranaceus (Huangqi) using PacBio Iso-Seq technology. Five SMRT cells were used for this size range.
Download Root_2-3k.5cell.roi.fq.gz (494.5 Mb)
Details View File Details

When using this data, please cite the original publication:

Li J, Harata-Lee Y, Denton MD, Feng Q, Rathjen JR, Qu Z, Adelson DL (2017) Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis. Cell Discovery 3: 17031. https://doi.org/10.1038/celldisc.2017.31

Additionally, please cite the Dryad data package:

Li J, Harata-Lee Y, Denton MD, Feng Q, Rathjen JR, Qu Z, Adelson DL (2017) Data from: Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis. Dryad Digital Repository. https://doi.org/10.5061/dryad.4sf85
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