Data from: Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod

Therkildsen NO, Hemmer-Hansen J, Als TD, Swain DP, Morgan MJ, Trippel EA, Palumbi SR, Meldrup D, Nielsen EE

Date Published: January 23, 2013

DOI: http://dx.doi.org/10.5061/dryad.4v0c5

 

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Title SNP_identity.txt
Downloaded 60 times
Description This tab-separated file contains a complete list of the SNPs analyzed in the study. For each SNP we provide the linkage group and specific linkage map position (where available), the accession reference ID (dbSNP), the original publication for the SNP discovery (source), whether the locus was included in the quality-filtered 1047 and 160 SNP data sets, and any miscellaneous notes
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Title SNP_genotypes_1047
Downloaded 26 times
Description This tab-separated file contains the genotype data for the initial analysis of the 4T 1928 and the 4T 2008 samples with the full 1047 SNP panel.
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Title Genepop_1047
Downloaded 28 times
Description The data from file "SNP_genotypes_1047.txt" presented in Genepop format.
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Title SNP_genotypes_160
Downloaded 19 times
Description This tab-separated file contains the genotype data for samples from 4T, 3Ps, 3NO and 4VsW analyzed with the 160 SNP panel.
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Title Genepop_160
Downloaded 30 times
Description The data from file "SNP_genotypes_160.txt" presented in Genepop format.
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Title Env_and_demographic_data
Downloaded 22 times
Description This tab-delimited file contains the environmental and demographic data used in the correlation analysis of temporal trends within the 4T management area. Description of the variables and the data sources can be found in Table S1. PMRNmean is fish length in cm, the mean individual weight at ages 5-7 is in kg, the biomass at ages 3+ is in tons, the mortality indices (M, F and Z) are estimated instantaneous rates, and the temperature variables are in degrees Celcius. Missing (not available) data are indicated by blanks.
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When using this data, please cite the original publication:

Therkildsen NO, Hemmer-Hansen J, Als TD, Swain DP, Morgan MJ, Trippel EA, Palumbi SR, Meldrup D, Nielsen EE (2013) Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod. Molecular Ecology 22(9): 2424–2440. http://dx.doi.org/10.1111/mec.12260

Additionally, please cite the Dryad data package:

Therkildsen NO, Hemmer-Hansen J, Als TD, Swain DP, Morgan MJ, Trippel EA, Palumbi SR, Meldrup D, Nielsen EE (2013) Data from: Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4v0c5
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