Data from: The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida)

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title NEWAppendix 1_Jan_2014
Downloaded 130 times
Description Taxonomy, voucher catalog numbers, and GenBank accession numbers for gene sequences used in study. An “N/A” (not available) indicates missing sequence data.
Download Appendix 1_Final_Table ALL EDITS.xls (89.6 Kb)
Details View File Details
Title Appendix 2_ATOL Lobsters morpho list
Downloaded 116 times
Description Morphological characters and states used in combined Bayesian analysis.
Download Appendix 2_ATOL Lobsters morpho list.docx (31.56 Kb)
Details View File Details
Title Appendix 3_morphomatrix
Downloaded 77 times
Description Morphomatrix used in combined Bayesian analysis
Download Appendix 3_morphomatrix.pdf (417.3 Kb)
Details View File Details
Title NEWAppendix 4_morpho_FINAL
Downloaded 79 times
Description Phylogenetic tree based on 156 morphological characters
Download Appendix 4_morpho_FINAL.pdf (317.0 Kb)
Details View File Details
Title NEWAppendix 5mito_FINAL2
Downloaded 67 times
Description Mitochondrial (12S, 16S, COI) gene tree for species included in combined analysis.
Download Appendix 5mito_FINAL2.pdf (1.154 Mb)
Details View File Details
Title NEWAppendix 6_18S-FINAL3
Downloaded 61 times
Description Maximum likelihood tree based on 18S data
Download Appendix 6_18S-FINAL3.pdf (1.095 Mb)
Details View File Details
Title NEWAppendix 7_28S_FINAL2
Downloaded 83 times
Description Maximum likelihood tree based on 28S data
Download Appendix 7_28S_FINAL2.pdf (1.080 Mb)
Details View File Details
Title NewAppendix_8_H3_FINAL2
Downloaded 58 times
Description Maximum Likelihood tree based on H3 data
Download Appendix_8_H3_FINAL2.pdf (1.104 Mb)
Details View File Details
Title NEWAppendix_9_IGTP_FINAL2
Downloaded 66 times
Description IGTP Species Tree Analysis for all taxa in this study
Download Appendix_9_IGTP_FINAL2.pdf (305.6 Kb)
Details View File Details
Title NewAppendix 10 Molecular_FINAL
Downloaded 121 times
Description Maximum likelihood tree based on molecular data (6 genes)
Download Appendix 10 Molecular_FINAL.pdf (294.5 Kb)
Download README.pdf (294.5 Kb)
Details View File Details
Title NEWAppendix 11_PhyloBayes_species_FINAL
Downloaded 59 times
Description Phylobayes analysis of all taxa in this study
Download Appendix 11_PhyloBayes_species_FINAL.pdf (363.4 Kb)
Details View File Details
Title NewAppendix 12_fossil justification
Downloaded 85 times
Description Justification for each fossil included in the 28 fossil divergence time analysis.
Download Appendix 12_fossil justification.docx (21.66 Kb)
Details View File Details
Title Appendix 13
Downloaded 55 times
Description Posterior distributions and parameters of τ1, τ2, and τ 3 (BPBP model) used in BEAST.
Download Appendix 13.pdf (27.93 Kb)
Details View File Details

When using this data, please cite the original publication:

Bracken-Grissom HD, Ahyong ST, Wilkinson RD, Felmann RM, Schweitzer CE, Breinholt JW, Bendall M, Palero F, Chan T, Felder DL, Robles R, Chu K, Tsang L, Kim D, Martin JW, Crandall KA (2014) The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology 63(4): 457-479. http://dx.doi.org/10.1093/sysbio/syu008

Additionally, please cite the Dryad data package:

Bracken-Grissom HD, Ahyong ST, Wilkinson RD, Felmann RM, Schweitzer CE, Breinholt JW, Bendall M, Palero F, Chan T, Felder DL, Robles R, Chu K, Tsang L, Kim D, Martin JW, Crandall KA (2014) Data from: The emergence of the lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4v875
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: