Data from: Phylogenetic patterns of codon evolution in the actin-depolymerizing factor/cofilin (adf/cfl) gene family

Roy-Zokan EM, Dyer KA, Meagher RB

Date Published: January 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.4vb0j

 

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Title PlantADFPhylo
Downloaded 9 times
Description Plant ADF gene sequence alignment and input file used for phylogenetic analysis in MrBayes
Download PlantADFPhylo.txt (30.78 Kb)
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Title AnimalPhylo
Downloaded 7 times
Description Vertebrate and invertebrate ADF/CFL gene sequence alignment and input file for phylogenetic analysis in MrBayes.
Download AnimalPhylo.txt (15.10 Kb)
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Title PlantADFPhylo
Downloaded 11 times
Description Newick output of the MrBayes phylogenetic analysis for the plant ADF gene sequences. This was the newick file that was used for fitmodel analyses.
Download PlantADFPhylo.nwk (2.388 Kb)
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Title AnimalPhylo
Downloaded 7 times
Description Newick output of the MrBayes phylogenetic analysis for the vertebrate and invertebrate ADF/CFL gene sequences. This was the newick file that was used for fitmodel analyses.
Download AnimalPhylo.newick (744 bytes)
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Title PlantADFFitmodel
Downloaded 7 times
Description Plant ADF sequence file used as input into fitmodel analyses.
Download PlantADFFitmodel.txt (30.68 Kb)
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Title AnimalFitmodel
Downloaded 6 times
Description Vertebrate and invertebrate ADF/CFL sequence file used as input into fitmodel analyses.
Download AnimalFitmodel.txt (14.99 Kb)
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Title PlantFigure3and4
Downloaded 17 times
Description Excel file of the plant ADF fitmodel data set used to produce figures 3 and 4 of the manuscript. Please see associated readme file for more details.
Download PlantFigure3and4.xlsx (119.6 Kb)
Download README.rtf (1.567 Kb)
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Title AnimalFigure3and4
Downloaded 13 times
Description Excel file of the animal ADF/CFL fitmodel data set used to produce figures 3 and 4 of the manuscript. Please see associated readme file for more details.
Download AnimalFigure3and4.xlsx (83.22 Kb)
Download README.rtf (1.572 Kb)
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Title TranslatedOriginal
Downloaded 3 times
Description This is the original alignment, translated to amino acid sequence, that was used for our phylogenetic and fitModeL analyses.
Download TranslatedOriginal.fas (5.138 Kb)
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Title TranslatedPRANK
Downloaded 3 times
Description This is the new alignment of the animal CFL/ADF protein variants that was generated using the program PRANK.
Download TranslatedPRANK.fas (7.346 Kb)
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When using this data, please cite the original publication:

Roy-Zokan EM, Dyer KA, Meagher RB (2015) Phylogenetic patterns of codon evolution in the actin-depolymerizing factor/cofilin (adf/cfl) gene family. PLOS ONE 10(12): e0145917. http://dx.doi.org/10.1371/journal.pone.0145917

Additionally, please cite the Dryad data package:

Roy-Zokan EM, Dyer KA, Meagher RB (2015) Data from: Phylogenetic patterns of codon evolution in the actin-depolymerizing factor/cofilin (adf/cfl) gene family. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4vb0j
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