Data from: Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing

Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW

Date Published: February 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.4vt08

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title mtDNA alignment
Downloaded 5 times
Description Nexus formatted file containing the partial (fragmented) mtDNA genome data.
Download mtDNA.nex (189.7 Kb)
Details View File Details
Title ddRADseq data
Downloaded 108 times
Description Compressed folder containing all of the ddRADseq data assemblies in phylip format. Each *.phy file contains one concatenated alignment of the ddRADseq data. The folders are organized at three levels: 1) homology filter (80 or 90 or 95), 2) paralog filter (1 or 3), 3) minimum individuals (3, 4, 5, 6, 7, 8, 9, or 10).
Download SNPdata_drayd.zip (1.152 Mb)
Details View File Details
Title Sequence capture data (all 584 captured loci)
Downloaded 97 times
Description Sequence capture loci in nexus file format. Files are named according to locus name. Also includes a concatenated matrix of the 584 loci.
Download nexus.zip (1.906 Mb)
Details View File Details
Title Sequence capture data (471 complete loci)
Downloaded 58 times
Description A subset of the sequence capture loci that were captured for all species included in the study. The files are in nexus file format. Files are named according to locus name. Also included is a concatenated matrix of the 471 loci.
Download nexus_471complete_loci.zip (1.579 Mb)
Details View File Details

When using this data, please cite the original publication:

Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW (2015) Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing. Genome Biology and Evolution 7(3): 706-719. http://dx.doi.org/10.1093/gbe/evv026

Additionally, please cite the Dryad data package:

Leaché AD, Chavez AS, Jones LN, Grummer JA, Gottscho AD, Linkem CW (2015) Data from: Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.4vt08
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: