Data from: Geneious! Simplified genome skimming methods for phylogenetic systematic studies: a case study in Oreocarya (Boraginaceae)

Ripma LA, Simpson MG, Hasenstab-Lehman K

Date Published: December 15, 2014

DOI: http://dx.doi.org/10.5061/dryad.50536

 

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Final ML trees
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Description Contains the final published phylogenetic trees for the nrDNA, cpDNA, and mtDNA in both nexus and Geneious format.
Download Final ML trees.zip (53.39 Kb)
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Title mtDNA exon sequences
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Description Contains the raw mtDNA exon sequences in both fasta and Geneious format. These were aligned and trimmed prior to analysis.
Download mtDNA exon sequences.zip (1.825 Mb)
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Title Nicotiana tabacum exons BA000042
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Description Contains the mtDNA exon sequences extracted from Nicotiana tabacum (BA000042). Reference guided assemblies were blastn searched against these extracted exons. Files are in both fasta and Geneious format.
Download Nicotiana tabacum exons BA000042.zip (107.7 Kb)
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Title mtDNA exon alignments
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Description Contains the final exon alignments used in analyses. Files are in both nexus and Geneious format.
Download mtDNA exon alignments.zip (398.7 Kb)
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Title cpDNA alignment
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Description Contains the final cpDNA alignment used in analyses. Files are in both nexus and Geneious format.
Download cpDNA alignment.zip (2.217 Mb)
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Title nrDNA alignment
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Description Contains the final nrDNA alignment used in analyses. Files are in both nexus and Geneious format.
Download nrDNA alignment.zip (310.9 Kb)
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When using this data, please cite the original publication:

Ripma LA, Simpson MG, Hasenstab-Lehman K (2014) Geneious! Simplified genome skimming methods for phylogenetic systematic studies: a case study in Oreocarya (Boraginaceae). Applications in Plant Sciences 2(12): 1400062. http://dx.doi.org/10.3732/apps.1400062

Additionally, please cite the Dryad data package:

Ripma LA, Simpson MG, Hasenstab-Lehman K (2014) Data from: Geneious! Simplified genome skimming methods for phylogenetic systematic studies: a case study in Oreocarya (Boraginaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.50536
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