Data from: High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA

Zhang R, Patena W, Armbruster U, Gang SS, Blum SR, Jonikas MC

Date Published: April 14, 2014

DOI: http://dx.doi.org/10.5061/dryad.50p47

 

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Title Supplemental Dataset 1: Mapped insertion sites of the individual mutants presented in Figure 2.
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Title Supplemental Dataset 2: Primer pairs used for the mutant insertion site characterization by PCR presented in Supplemental Figure 4.
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Title Supplemental Dataset 3: Oligonucleotide sequences used in this manuscript.
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Title Supplemental Dataset 4: Full list of hotspots and coldspots with FDR-adjusted p-values <0.05.
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Title Supplemental Dataset 5: List of cassette fragmentation motifs and enrichment statistics.
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Title Supplemental Dataset 6: All the programs written in our lab that were used for this project.
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Title Supplemental Dataset 7: Insertion list for the dataset used for Figures 3 and 4, replicate a, raw.
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Download Supplemental_Dataset_7_insertion-list_Fig...aw.txt (1.011 Mb)
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Title Supplemental Dataset 8: Insertion list for the dataset used for Figures 3 and 4, replicate b, raw.
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Title Supplemental Dataset 9: Insertion list for the dataset used for Figures 3 and 4, both replicates, filtered.
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Download Supplemental_Dataset_9_insertion-list_Fig...ed.txt (1.693 Mb)
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Title Supplemental Dataset 10: Insertion list for the dataset used for Figure 5, 5' side, raw.
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Download Supplemental_Dataset_10_insertion-list_Fi...aw.txt (130.2 Kb)
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Title Supplemental Dataset 11: Insertion list for the dataset used for Figure 5, 3' side, raw.
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Download Supplemental_Dataset_11_insertion-list_Fi...aw.txt (122.5 Kb)
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Title README file for Supplemental Datasets 7-11
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When using this data, please cite the original publication:

Zhang R, Patena W, Armbruster U, Gang SS, Blum SR, Jonikas MC (2014) High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA. The Plant Cell 26(4): 1398-1409. http://dx.doi.org/10.1105/tpc.114.124099

Additionally, please cite the Dryad data package:

Zhang R, Patena W, Armbruster U, Gang SS, Blum SR, Jonikas MC (2014) Data from: High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.50p47
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