Data from: Study of genetic variability in Vitis vinifera L. germplasm by high-throughput Vitis18kSNP array: the case of Georgian genetic resources

De Lorenzis G, Chipashvili R, Failla O, Maghradze D

Date Published: June 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.521h5

 

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Title Additional file Table S1
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Description SNP allelic profile of 43 grapevine cultivars and 28 putative wild individuals from Georgia at 15,317 SNP loci. Nucleotides were scored with Genotyping Module 1.9.4 of the GenomeStudio Data Analysis V2011.1 software (Illumina Inc.). Dataset was filtered based on SNP call quality and GenTrain score: samples with low SNP call quality (p50GC<0.54) were removed from the analysis and only SNPs with a GenTrain score higher than 0.6 were retained. Markers with a number of NCs (non-call) higher than 20%, as well as the 100% NC markers, were removed.
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When using this data, please cite the original publication:

De Lorenzis G, Chipashvili R, Failla O, Maghradze D (2015) Study of genetic variability in Vitis vinifera L. germplasm by high-throughput Vitis18kSNP array: the case of Georgian genetic resources. BMC Plant Biology 15:154. http://dx.doi.org/10.1186/s12870-015-0510-9

Additionally, please cite the Dryad data package:

De Lorenzis G, Chipashvili R, Failla O, Maghradze D (2015) Data from: Study of genetic variability in Vitis vinifera L. germplasm by high-throughput Vitis18kSNP array: the case of Georgian genetic resources. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.521h5
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