Data from: Dispersal capacity predicts both population genetic structure and species richness in reef fishes

 

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Title Data file: Fst values by species
Downloaded 18 times
Description Fst values used as estimates of population genetic structure. File formatted for input into R.
Download Species_Fst.csv (16.12 Kb)
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Title Data file: Species richness in reef fish families
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Description Species richness values used as estimates of diversity. File formatted for input into R.
Download Reeffams_diversity.csv (4.086 Kb)
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Title Database of Fst data for benthic fishes
Downloaded 93 times
Description This is the full database used by Riginos et al. 2011 (Ecography). The records omitted in the 2014 Am Nat study are indicated. References to original genetic source materials are indicated.
Download Fish_Fst_database.xls (1.523 Mb)
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Title Tree1: Constrained_chronogram
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Description Nexus file of chronogram based on a constrained tree as described in text.
Download Constrained_chronogram.nex (8.095 Kb)
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Title Tree2: Less_constained_chronogram
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Description Chronogram of alternative phylogenetic tree used to corroborate results from fully constrained tree. See journal article for details.
Download Less_constained_chronogram.nex (7.955 Kb)
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Title Supplementary tables: Linear model results based on unconstrained tree
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Description Same as tables presented in the full publication except these analyses are based on the less constrained phylogenetic tree.
Download Riginos_2014_AmNat_supptables.pdf (60.44 Kb)
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Title Supplementary Figure: Probability (P-value) curves for reproductive strategy factor in PGLS models from Table 1 with varying degrees of freedom
Downloaded 22 times
Description Probability (P-value) curves for reproductive strategy factor in PGLS models from Table 1 with varying degrees of freedom. As the true phylogeny is unknowable, all statistical estimates are best guesses. Because there are five clades with the benthic guarding reproductive strategy, the most conservative choice for degrees of freedom would be d.f. = 4, shown as a dotted vertical line; d.f. = 4 is certain to be an underestimate of the true degrees of freedom as benthic guarding is common among freshwater fishes suggesting many character state changes along the full acanthomorph tree. An upper bound to degrees of freedom might be set by adjusting for polytomies (following Purvis and Garland 1993; Garland and Díaz-Uriarte 1999) as shown as vertical dotted lines. Finally the phylogenetic degrees of freedom determined by GEE is shown as a solid vertical line. The true degrees of freedom for our PGLS analyses are likely to fall somewhere within this bounded range for degrees of freedom.
Download Probabilities_supp_fig.pdf (261.6 Kb)
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Title Full reference list for sources of original Fst estimates
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Description Bibliography corresponding to entries in the "Database of Fst data for benthic fishes"
Download GeneticData_refs.rtf (50.25 Kb)
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When using this data, please cite the original publication:

Riginos C, Buckley YM, Blomberg SP, Treml EA (2014) Dispersal capacity predicts both population genetic structure and species richness in reef fishes. The American Naturalist 184(1): 52-64. http://dx.doi.org/10.1086/676505

Additionally, please cite the Dryad data package:

Riginos C, Buckley YM, Blomberg SP, Treml EA (2014) Data from: Dispersal capacity predicts both population genetic structure and species richness in reef fishes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.522cm
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