Data from: Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the ‘anaerobic’ termite gut spirochete Treponema primitia

 

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Title 2-hydroxymuconic semialdehyde hydrolase ARB output.nex
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Title 2-oxopent-4-enoate hydratase ARB output.nex
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Title 4-hydroxy-2-oxopentanoate aldolase ARB output.nex
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Title 4-hydroxy-2-oxopentanoate aldolase DmpG-like domain ARB output.nex
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Title 4-hydroxy-2-oxopentanoate aldolase HMGL-like domain ARB output.nex
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Title acetaldehyde dehydrogenase ARB output.nex
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Title acetaldehyde dehydrogenase dimerisation domain ARB output.nex
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Title acetaldehyde dehydrogenase NAD binding domain ARB output.nex
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Title catechol 2,3-dioxygenase ARB output.nex
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Title catechol 2,3-dioxygenase C-terminal domain ARB output.nex
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Title catechol 2,3-dioxygenase C-terminal domain with extra-domain region ARB output.nex
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Title catechol 2,3-dioxygenase C-terminal domain with intra-domain region ARB output.nex
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Title catechol 2,3-dioxygenase N-terminal domain ARB output.nex
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Title catechol 2,3-dioxygenase N-terminal domain with extra-domain region ARB output.nex
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Title catechol 2,3-dioxygenase N-terminal domain with intra-domain region ARB output.nex
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Title ferredoxin-like peptide ARB output.nex
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Title acetaldehyde dehydrogenase dimerisation domain Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase C-terminal domain with extra-domain region Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase C-terminal domain Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase C-terminal domain with intra-domain region Mr Bayes output.nex.con.tre
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Title acetaldehyde dehydrogenase NAD binding domain Mr Bayes output.nex.con.tre
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Title 4-hydroxy-2-oxopentanoate aldolase Mr Bayes output.nex.con.tre
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Title 4-hydroxy-2-oxopentanoate aldolase HMGL-like domain Mr Bayes output.nex.con.tre
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Download 4-hydroxy-2-oxopentanoate aldolase HMGL-l...on.tre (17.70 Kb)
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Title 4-hydroxy-2-oxopentanoate aldolase DmpG-like domain Mr Bayes output.nex.con.tre
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Title 2-oxopent-4-enoate hydratase Mr Bayes output.nex.con.tre
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Title 2-hydroxymuconic semialdehyde hydrolase Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase N-terminal domain with extra-domain region Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase N-terminal domain Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase N-terminal domain with intra-domain region Mr Bayes output.nex.con.tre
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Title acetaldehyde dehydrogenase Mr Bayes output.nex.con.tre
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Title catechol 2,3-dioxygenase Mr Bayes output.nex.con.tre
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Title ferredoxin-like peptide Mr Bayes output.nex.con.tre
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Title Depth of O2 penetration in Treponema primitia O2/aromatic gradient cultures
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Title Raw growth (OD) data.xlsx
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Title 2-hydroxymuconic semialdehyde hydrolase original MUSCLE alignment.txt
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Title 2-oxopent-4-enoate hydratase original MUSCLE alignment.txt
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Title 4-hydroxy-2-oxopentanoate aldolase DmpG-like domain original MUSCLE alignment.txt
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Download 4-hydroxy-2-oxopentanoate aldolase DmpG-l...nt.txt (774.9 Kb)
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Title 4-hydroxy-2-oxopentanoate aldolase HMGL-like domain original MUSCLE alignment.txt
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Title 4-hydroxy-2-oxopentanoate aldolase original MUSCLE alignment.txt
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Title acetaldehyde dehydrogenase dimerisation domain original MUSCLE alignment.txt
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Title acetaldehyde dehydrogenase NAD binding domain original MUSCLE alignment.txt
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Title acetaldehyde dehydrogenase original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase C-terminal domain original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase C-terminal domain with extra-domain region original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase C-terminal domain with intra-domain region original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase N-terminal domain original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase N-terminal domain with extra-domain region original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase N-terminal domain with intra-domain region original MUSCLE alignment.txt
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Title catechol 2,3-dioxygenase original MUSCLE alignment.txt
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Title ferredoxin-like peptide original MUSCLE alignment.txt
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When using this data, please cite the original publication:

Lucey KS, Leadbetter JR (2013) Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the ‘anaerobic’ termite gut spirochete Treponema primitia. Molecular Ecology 23(6): 1531–1543. http://dx.doi.org/10.1111/mec.12598

Additionally, please cite the Dryad data package:

Lucey KS, Leadbetter JR (2013) Data from: Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the ‘anaerobic’ termite gut spirochete Treponema primitia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5248s
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