Data from: Mixed-ancestry and admixture in Kaua’i’s feral chickens: invasion of domestic genes into ancient Red Junglefowl reservoirs?

Gering E, Johnsson M, Willis P, Getty T, Wright D

Date Published: January 29, 2015

DOI: http://dx.doi.org/10.5061/dryad.55h83

 

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Title Mitochondrial DNA alignments
Downloaded 4 times
Description Sequences and alignments used for whole mitochondrial and control region phylogenies. Sequences files in FASTA format contain Kauai sequences from this work (consensus sequences from mapping short reads against the chicken reference genome) and previously published sequences from Genbank. Sequences were aligned with ClustalW and are stored in nexus format.
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Title Mitochondrial DNA phylogenies
Downloaded 3 times
Description Bayesian whole mitochondrial genome and control region phylogenies in nexus format.
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Title Nuclear variants
Downloaded 15 times
Description Nuclear variants used for population genetic analyses (PCA, STRUCTURE and ADMIXTURE). One dataset contains 3000 randomly selected variants, and the other SNPs that were typed both in this study and Wragg et al (2012).
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Title Supplementary table 2
Downloaded 10 times
Description Supplementary table 2 in tab-delimited text format, containing vocalization data and links to YouTube and database entry IDs for Xeno Canto sources.
Download supplementary_vocalization_data.txt (5.532 Kb)
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When using this data, please cite the original publication:

Gering E, Johnsson M, Willis P, Getty T, Wright D (2015) Mixed-ancestry and admixture in Kaua’i’s feral chickens: invasion of domestic genes into ancient Red Junglefowl reservoirs? Molecular Ecology 24(9): 2112-2124. http://dx.doi.org/10.1111/mec.13096

Additionally, please cite the Dryad data package:

Gering E, Johnsson M, Willis P, Getty T, Wright D (2015) Data from: Mixed-ancestry and admixture in Kaua’i’s feral chickens: invasion of domestic genes into ancient Red Junglefowl reservoirs? Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.55h83
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