Data from: Testing the link between population genetic differentiation and clade diversification in Costa Rican orchids

 

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Title all spp AFLP allele tables
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Description Final AFLP allele tables for all study species. See Readme and manuscript for more details.
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Title additional.study.species.ecology.fordryad
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Description Additional ecological data for all study species. See the general Readme and manuscript for more details.
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Title pairwise.data.fordryad
Downloaded 70 times
Description Pairwise data for comparisons of study populations - population genetic distances, geographical distances, and enviromental differences. See general Readme and manuscript for more details.
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Title pop.code.legend.fordryad
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Description Explanation of population codes used in some of the data files here on Dryad.
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Title sample.data.fordryad
Downloaded 260 times
Description Branch circumference and other data for all samples used in analyses. See general Readme and manuscript for more details.
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Title studyclade.ecol.bysp.fordryad
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Description Ecological data for all species from Costa Rica within the study clades. See general Readme and manuscript for more details.
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Title studyclade.range.size.bysp.fordryad
Downloaded 83 times
Description Range size data for all species within each study clade. See general Readme and manuscript for more details.
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Title table.S1.fordryad
Downloaded 115 times
Description Table S1 from the Supplementary Materials - Voucher information for samples collected for this study and deposited at the Lankester Botanic Garden in Costa Rica.
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Title table.S2.fordryad
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Description Table S2 from the Supplementary Materials - Detailed description of each location where samples were collected.
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Title table.S3.fordryad
Downloaded 111 times
Description Table S3 from the Supplementary Materials - Details of AFLP method used for each study species. A star by the number of preamplification PCR cycles indicates that a 2 min extension time was used instead of the standard 2.5 min.
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Title table.S4.fordryad
Downloaded 80 times
Description Table S4 from the Supplementary Materials - Scoring analysis details for all analysed AFLP datasets. Datasets that had unacceptably high error rates were not used for analyses and are not listed here. unf. = unfiltered; fil. = filtered; abs. = absolute scoring threshold; rel. = relative scoring threshold.
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Title table.S5.fordryad
Downloaded 100 times
Description Table S5 from the Supplementary Materials - GenBank accession numbers for newly-generated matK sequences and the collection numbers of the samples used to generate the sequences.
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Title table.S6.fordryad
Downloaded 109 times
Description Table S6 from the Supplementary Materials - Ecological characteristics of study clades. Values for each clade are means of species values (using data from these files on Dryad: studyclade.ecol.bysp.fordryad.txt and studyclade.range.size.bysp.fordryad.txt). Species range size is measured as number of TDWG Level 2 regions.
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Title table.S7.fordryad
Downloaded 106 times
Description Table S7 from the Supplementary Materials - Branch circumference mean and variance for all study species over all sampled plants from each species. Dryadella odontostele was only found growing on a branch once, and so no variance is given.
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Title Readme
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Description General readme giving further details on data files here on Dryad.
Download Readme.txt (5.755 Kb)
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When using this data, please cite the original publication:

Kisel Y, Moreno-Letelier AC, Bogarín D, Powell MP, Chase MW, Barraclough TG (2012) Testing the link between population genetic differentiation and clade diversification in Costa Rican orchids. Evolution 66(16): 3035-3042. http://dx.doi.org/10.1111/j.1558-5646.2012.01663.x

Additionally, please cite the Dryad data package:

Kisel Y, Moreno-Letelier AC, Bogarín D, Powell MP, Chase MW, Barraclough TG (2012) Data from: Testing the link between population genetic differentiation and clade diversification in Costa Rican orchids. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.55md6hj5
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