Data from: Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences

Che L, Zhang S, Li Y, Liang D, Pang H, Ślipiński A, Zhang P

Date Published: March 7, 2017

DOI: http://dx.doi.org/10.5061/dryad.55p06

 

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Title data_nex
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Description This zip package includes data matrices used in this study.
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Title DataBase_1470candidates
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Description The database containing a total of 1470 NPC marker candidates for beetle phylogenety, including nucleotide and protein alignments,and summary information of the marker candidates.
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Title python_scripts
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Description Automation Python scripts used in the analysis, including some genome mining procedures (Filter_long_single_copy_seqs,Auto_filter_alignments) and Auto_exclusion_introns. All scripts call module of Biopython. Please install Biopython before use.
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Title Supplemental_Tables
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Description Supplemental Tables in this study.
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When using this data, please cite the original publication:

Che L, Zhang S, Li Y, Liang D, Pang H, Ślipiński A, Zhang P (2017) Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences. Molecular Ecology Resources, online in advance of print. http://dx.doi.org/10.1111/1755-0998.12664

Additionally, please cite the Dryad data package:

Che L, Zhang S, Li Y, Liang D, Pang H, Ślipiński A, Zhang P (2017) Data from: Genome-wide survey of nuclear protein-coding markers for beetle phylogenetics and their application in resolving both deep and shallow-level divergences. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.55p06
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