Data from: "454 sequencing of reduced representation libraries to discover single nucleotide polymorphisms (SNPs) in Megabunus harvestmen" in Genomic Resources Notes accepted 1 December 2013 to 31 January 2014

Wachter G, Schlick-Steiner B, Steiner F, Arthofer W

Date Published: April 2, 2014

DOI: http://dx.doi.org/10.5061/dryad.55qb2

 

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Title Processing protocol and scripts
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Description A data processing protocol and all custom python scripts that were used for the analysis of the NGS data.
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Title FASTA and ALN files
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Description The FASTA files of all short reads matching to at least 3 of 4 study species, and the FASTA and ALN files of all short reads matching to all 4 species. ALN files were generated using Clustal Omega.
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Title Distance table
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Description Genetic distance table of all alignments with matches to 4 species. This table was the basis for locus selection for subsequent primer design.
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Title Distance table purged
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Title Decontamination files scripts protocol
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Description Contains the BLAST results of the RRL reads against the NCBI nt collection, and all downstream steps performed to remove Homo sapiens sequences
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Title FASTA and ALN files purged
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Arthofer W, Clarke AR, Kumaran N, Prentis PJ, Schafellner C, Schlick-Steiner, BC, Steiner FM, Wachter GA (2014) Genomic Resources Notes accepted 1 December 2013 – 31 January 2014. Molecular Ecology Resources 14(3): 664–665. http://dx.doi.org/10.1111/1755-0998.12255

Additionally, please cite the Dryad data package:

Wachter G, Schlick-Steiner B, Steiner F, Arthofer W (2014) Data from: "454 sequencing of reduced representation libraries to discover single nucleotide polymorphisms (SNPs) in Megabunus harvestmen" in Genomic Resources Notes accepted 1 December 2013 to 31 January 2014. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.55qb2
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