Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus

Gascuel F, Choisy M, Duplantier J, Débarre F, Brouat C

Date Published: May 13, 2013

DOI: http://dx.doi.org/10.5061/dryad.55t60

 

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Title Figure1
Downloaded 16 times
Description R script computing and plotting the equilibrium states for a susceptible population, according to the rat's maximal birth rate, r, and the transmission rate, beta. (a) K = 25,000 rats, (b) K = 1,000 rats.
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Title Figure 1 - system dynamics
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Description System dynamics (in C language) used in figure1.r (system (S1.1) in the supporting text S1 of the article).
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Title Figure 2
Downloaded 16 times
Description R script computing and plotting the equilibrium states for a rat population including resistant rats, according to the maximal birth rate of rats, r, and the transmission rate, beta. K = 25,000 rats.
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Title Figure 2 - system dynamics
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Description System dynamics (in C language) used in figure2.r (system (1) in the main text of the article).
Download sir_fig2.c (1.093 Kb)
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Title Figure 3
Downloaded 22 times
Description R script computing the equilibrium states for a susceptible host metapopulation composed of (a) 2 subpopulations, (b) 4 subpopulations and (c) 25 subpopulations (deterministic analysis). Total carrying capacity = 25,000 rats.
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Title Figure 3 (a) - system dynamics with 2 subpopulations
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Description System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 2 subpopulations.
Download sir2P_fig3a.c (1.406 Kb)
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Title Figure 3 (b) - system dynamics with 4 subpopulations
Downloaded 8 times
Description System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 4 subpopulations.
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Title Figure 3 (c) - system dynamics with 25 subpopulations
Downloaded 12 times
Description System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 25 subpopulations.
Download sir25P_fig3c.c (3.174 Kb)
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Title Figure 4 (a)
Downloaded 11 times
Description R script computing and plotting the estimated probability of persistence of susceptible rats S and infectious rats I through time, in a non structured population of K=25,000 rats. To get Figures 4(b) and 4(c), only the parameter values need to be modified in this file.
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When using this data, please cite the original publication:

Gascuel F, Choisy M, Duplantier J, Débarre F, Brouat C (2013) Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus. PLoS Computational Biology 9(5): e1003039. http://dx.doi.org/10.1371/journal.pcbi.1003039

Additionally, please cite the Dryad data package:

Gascuel F, Choisy M, Duplantier J, Débarre F, Brouat C (2013) Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.55t60
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