Data from: Speciation in Western Scrub-Jays, Haldane’s rule, and genetic clines in secondary contact

Gowen FC, Maley JM, Cicero C, Peterson AT, Faircloth BC, Warr TC, McCormack JE

Date Published: June 19, 2014

DOI: http://dx.doi.org/10.5061/dryad.57f48

 

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Title Locality Info and Genetic and Phenotypic Data for Western Scrub-Jay Museum Specimens
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Description This Excel spreadsheet lists all 689 Western Scrub-Jay museum specimens used in the study. Museum abbreviations: Field Museum of Natural History (FMNH); Moore Laboratory of Zoology, Occidental College (MLZ); Museum of Vertebrate Zoology, Berkeley (MVZ). Haplotypes of the cytochrome B gene are coastal (C) or interior (I). Structure results refer to the raw results making up the different panels of Figure 3. The raw microsatellite data are listed in actual allele sizes after allele calling. For the phenotypic data: collar, vent, and eyestripe are qualitatively-scored categorical data ranging from 1 to 6. Collar is the amount of blue coming down from the shoulders under the necklace with 1 = heavy collar (coastal) and 6 = little collar (interior). Vent is the amount of blue tinging to the feathers under the tail coverts, with 1 = white feathers (coastal) and 6 = heavily blue-tinged feathers (interior). Eyestripe is the boldness of the white stripe above the eye, with 1 = bold stripe (coastal) and 6 = small stripe (interior). Other phenotypic data are in the form of continuous variables measured in millimeters. Blank cells mean there is no data taken for that individual at that variable.
Download All_Samples_Dryad.xlsx (177.5 Kb)
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Title Bayesian phylogeny of Aphelocoma from cytochrome b gene
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Description This is a phylogeny generated in BEAST of the entire genus Aphelocoma (and outgroups) based on cytochrome b sequences from GenBank and those generated for Western Scrub-Jays for this study.
Download Aphelocoma.consensus.tre (8.889 Kb)
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When using this data, please cite the original publication:

Gowen FC, Maley JM, Cicero C, Peterson AT, Faircloth BC, Warr TC, McCormack JE (2014) Speciation in Western Scrub-Jays, Haldane’s rule, and genetic clines in secondary contact. BMC Evolutionary Biology 14:135. http://dx.doi.org/10.1186/1471-2148-14-135

Additionally, please cite the Dryad data package:

Gowen FC, Maley JM, Cicero C, Peterson AT, Faircloth BC, Warr TC, McCormack JE (2014) Data from: Speciation in Western Scrub-Jays, Haldane’s rule, and genetic clines in secondary contact. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.57f48
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