Data from: Diversification patterns in the CES clade (Brassicaceae tribes Cremolobeae, Eudemeae, Schizopetaleae) in Andean South America

Salariato DL, Zuloaga FO, Franzke A, Mummenhoff K, Al-Shehbaz IA

Date Published: May 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.57gj4

 

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Title ITS_Brassicaceae_dataset
Downloaded 14 times
Description ITS matrix from Brassicaceae dataset
Download ITS.nex (246.6 Kb)
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Title phyA_Brassicaceae_dataset
Downloaded 13 times
Description phyA matrix from Brassicaceae dataset
Download phyA.nex (535.5 Kb)
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Title chs_Brassicaceae_dataset
Downloaded 8 times
Description chs matrix from Brassicaceae dataset
Download chs.nex (325.2 Kb)
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Title ndhF_Brassicaceae_dataset
Downloaded 9 times
Description ndhF matrix from Brassicaceae dataset
Download ndhF.nex (502.5 Kb)
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Title rbcL_Brassicaceae_dataset
Downloaded 7 times
Description rbcL matrix from Brassicaceae dataset
Download rbcL.nex (308.3 Kb)
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Title matK_Brassicaceae_dataset
Downloaded 6 times
Description matK matrix from Brassicaceae dataset
Download matK.nex (385.5 Kb)
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Title trnLF_Brassicaceae_dataset
Downloaded 7 times
Description trnLF matrix from Brassicaceae dataset
Download trnLF.nex (360.7 Kb)
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Title nad4_Brassicaceae_dataset
Downloaded 9 times
Description nad4 matrix from Brassicaceae dataset
Download nad4.nex (533.9 Kb)
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Title fossil_calibration_analyses(BEASTv2.2)
Downloaded 20 times
Description XML file for running the analyses with the Brassicaceae dataset (supermatrix approach) in BEASTv2.2 (Bouckaert et al., 2014) using the four Brassicales fossil scheme for calibration.
Download fossil_calibration.xml (3.490 Mb)
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Title secondary_calibration_analyses(BEASTv2.2)
Downloaded 12 times
Description XML file for running the analyses with the Brassicaceae dataset (supermatrix approach) in BEASTv2.2 (Bouckaert et al., 2014) using the three secondary calibration scheme for calibration
Download secondary_calibration.xml (3.489 Mb)
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Title ML_RAxML_bestTree_Brassicaceae_dataset
Downloaded 11 times
Description Maximum likelihood tree obtained using the Brassicaceae dataset (supermatrix approach) under RAxML 8.1.11
Download ML_RAxML_bestTree.tre (16.74 Kb)
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Title fossil_calibration_MCCT_Brassicaceae_dataset
Downloaded 7 times
Description Maximum clade credibility tree obtained in BEASTv2.2 using the Brassicaceae dataset (supermatrix approach) and the "four Brassicales fossil scheme" for calibration.
Download fossil_calibration_MCCT.tre (251.6 Kb)
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Title secondary_calibration_MCCT_Brassicaceae_dataset
Downloaded 9 times
Description Maximum clade credibility tree obtained in BEASTv2.2 using the Brassicaceae dataset (supermatrix approach) and the "secondary calibration scheme" for calibration.
Download secondary_calibration_MCCT.tre (250.4 Kb)
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Title ITS_CES_dataset
Downloaded 4 times
Description ITS matrix from CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset
Download cITS_CES(BEAST).nex (43.92 Kb)
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Title trnLF_CES_dataset
Downloaded 4 times
Description trnLF matrix from CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset
Download ctrnLF_CES(BEAST).nex (70.12 Kb)
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Title trnH_CES_dataset
Downloaded 7 times
Description trnH matrix from CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset
Download ctrnH_CES(BEAST).nex (32.76 Kb)
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Title rps16_CES_dataset
Downloaded 8 times
Description rps16 matrix from CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset
Download crps16_CES(BEAST).nex (76.83 Kb)
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Title CES_analyses(BEASTv2.2)
Downloaded 19 times
Description XML file for running the analyses with the CES dataset (Cremolobeae, Eudemeae, Schizopetaleae) in BEASTv2.2 (Bouckaert et al., 2014).
Download CES.xml (305.9 Kb)
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Title ML_RAxML_bestTree_CES_dataset
Downloaded 11 times
Description Maximum likelihood tree obtained using the CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset in RAxML 8.1.11 (Stamatakis, 2006)
Download CES_RAxML_bestTree.tre (4.429 Kb)
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Title MCCT_CES_dataset
Downloaded 9 times
Description Maximum clade credibility tree obtained in BEASTv2.2 analyses using the CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset.
Download CES_MCCT.tre (70.60 Kb)
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Title 1000_trees_CES_dataset
Downloaded 12 times
Description 1000 posterior trees from the BEASTv2.2 analyses using the CES (Cremolobeae, Eudemeae, Schizopetaleae) dataset.
Download CES_1000_trees.tre (6.320 Mb)
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Title Materials&Methods
Downloaded 25 times
Description Materials & Methods for data analyses
Download Materials&Methods.docx (24.94 Kb)
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When using this data, please cite the original publication:

Salariato DL, Zuloaga FO, Franzke A, Mummenhoff K, Al-Shehbaz IA (2016) Diversification patterns in the CES clade (Brassicaceae tribes Cremolobeae, Eudemeae, Schizopetaleae) in Andean South America. Biological Journal of the Linnean Society 181(4): 543-566. http://dx.doi.org/10.1111/boj.12430

Additionally, please cite the Dryad data package:

Salariato DL, Zuloaga FO, Franzke A, Mummenhoff K, Al-Shehbaz IA (2016) Data from: Diversification patterns in the CES clade (Brassicaceae tribes Cremolobeae, Eudemeae, Schizopetaleae) in Andean South America. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.57gj4
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