Data from: Genomic signatures of geographic isolation and natural selection in coral reef fishes

Gaither MR, Bernal MA, Coleman RR, Bowen BW, Jones SA, Simison WB, Rocha LA

Date Published: February 26, 2015

DOI: http://dx.doi.org/10.5061/dryad.581f3

 

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Title Processed Illumina reads for Acanthurus reversus
Downloaded 7 times
Description Demultiplexed and quality filtered Illumina HiSeq2000 reads for all 9 Acanthurus reversus samples used in this study. These samples were used as input files for the Stacks denovo_map.pl pipeline.
Download ARE_rawRAD_ME_2015.tar.gz (1.120 Gb)
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Title Processed Illumina reads for Acanthurus olivaceus
Downloaded 5 times
Description Demultiplexed and quality filtered Illumina HiSeq 2000 reads for all 52 Acanthurus olivaceus samples used in this study. These samples were used as the input files for the Stacks denovo_map.pl pipeline.
Download AOL_rawRAD_ME_2015.tar.gz (6.956 Gb)
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Title All Loci Structure File
Downloaded 3 times
Download All_Loci_StructureFile.txt (932.1 Kb)
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Title Cytb Alignment
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Download CytbAlignment.txt (173.7 Kb)
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Title Gpd2 Alignment
Downloaded 4 times
Download Gpd2Alignment.txt (29.79 Kb)
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Title Loci under balancing selection Structure File
Downloaded 6 times
Download Loci_under_balancing_selection_StructureFile.txt (448.1 Kb)
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Title Loci under divergent selection Structure File
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Download Loci_under_divergent_selection_StructureFile.txt (17.43 Kb)
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Title Neutral loci Structure File
Downloaded 4 times
Download Neutral_loci _StructureFile .txt (382.0 Kb)
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Title S7 Alignment
Downloaded 3 times
Download S7Alignment.txt (57.32 Kb)
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Title Sample database
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Download Sample_database.xlsx (13.67 Kb)
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When using this data, please cite the original publication:

Gaither MR, Bernal MA, Coleman RR, Bowen BW, Jones SA, Simison WB, Rocha LA (2015) Genomic signatures of geographic isolation and natural selection in coral reef fishes. Molecular Ecology 24(7): 1543-1557. http://dx.doi.org/10.1111/mec.13129

Additionally, please cite the Dryad data package:

Gaither MR, Bernal MA, Coleman RR, Bowen BW, Jones SA, Simison WB, Rocha LA (2015) Data from: Genomic signatures of geographic isolation and natural selection in coral reef fishes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.581f3
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