Data from: Microhaplotypes provide increased power from short-read DNA sequences for relationship inference

Baetscher D, Clemento A, Ng T, Anderson E, Garza J

Date Published: November 14, 2017

DOI: https://doi.org/10.5061/dryad.5863d

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Title Panel 1: vcf for 96 microhaplotypes
Downloaded 4 times
Description Variant call format file for 96 of the 192 microhaplotypes described in Baetscher et al.
Download satro144_panel1_flashed_noMNP_noComplex.vcf (3.999 Mb)
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Title Panel 2: vcf for 96 microhaplotypes
Downloaded 1 time
Description Variant call format file for 96 of the 192 microhaplotypes described in Baetscher et al.
Download satro96_panel2_run2_flashed_noMNP_noComplex.vcf (2.972 Mb)
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Title Panel 1: BAM files
Downloaded 6 times
Description BAM files for 144 kelp rockfish with 96 microhaplotypes
Download Panel1_bam_files.zip (1.464 Gb)
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Title Panel 2: BAM files
Downloaded 3 times
Description BAM files for 96 kelp rockfish with 96 microhaplotypes
Download Panel2_bam_files.zip (703.9 Mb)
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Title Description of statistical analyses
Downloaded 2 times
Description R Notebook describing all statistical analyses in Baetscher et al.
Download R_Notebook_Statistical_BaetscherEtAl.zip (47.74 Mb)
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Title Consensus sequences
Downloaded 2 times
Description FASTA file with consensus sequences for all 192 targeted amplicons
Download 192_loci_kelpRF_consensus.fasta (25.68 Kb)
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Title Primer sequences
Downloaded 3 times
Description Primer sequences for 192 targeted regions.
Download Primers_kelpRF_192_loci.xlsx (48.54 Kb)
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Title Genotype file
Downloaded 1 time
Description Genotypes and associated read depths for 144 kelp rockfish at 165 microhaplotypes
Download Genotypes_144kelpRF.csv (794.0 Kb)
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When using this data, please cite the original publication:

Baetscher DS, Clemento AJ, Ng TC, Anderson EC, Garza JC (2017) Microhaplotypes provide increased power from short-read DNA sequences for relationship inference. Molecular Ecology Resources, online in advance of print. https://doi.org/10.1111/1755-0998.12737

Additionally, please cite the Dryad data package:

Baetscher D, Clemento A, Ng T, Anderson E, Garza J (2017) Data from: Microhaplotypes provide increased power from short-read DNA sequences for relationship inference. Dryad Digital Repository. https://doi.org/10.5061/dryad.5863d
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