Data from: Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)

Waples RK, Seeb LW, Seeb JE

Date Published: October 30, 2015

DOI: http://dx.doi.org/10.5061/dryad.5b64r.2

 

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Title RAD seqeunces and genotypes
Downloaded 16 times
Description Raw genotype data for all identified catalog entries. Each line gives genotypes for a single catalog entry, columns are individuals. The first 2 columns are metadata for each catalog entry and a header line is present. This is a zipped tab-delimited text file and line endings are in Unix format: "\n". This file is generated by Stacks v1.05 (Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. and Cresko, W. A. (2013), Stacks: an analysis tool set for population genomics. Mol Ecol, 22: 3124–3140. doi:10.1111/mec.12354)
Download RAD_genotypes.zip (5.708 Mb)
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Title primer-based (taqMan) genotypes
Downloaded 3 times
Description This file contains genotype data generated by primer- based genotyping. Each row is an individual, labeled in the first column. Each column past the first gives genotypes for a specific locus, labeled in the first row. Only haploid offspring are included and they are expected to be homozygous. Alleles are specified by 'X' and 'Y', uncalled genoyypes are specified with 'no call' or 'invalid'. This is a text file with Windows line endings: "\r\n"
Download taqMan_genotypes.tsv (33.51 Kb)
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Title Catalog sequences
Downloaded 14 times
Description This is a zipped tab-delimited text file and line endings are in Unix format: "\n". This file is generated by Stacks v1.05 (Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A. and Cresko, W. A. (2013), Stacks: an analysis tool set for population genomics. Mol Ecol, 22: 3124–3140. doi:10.1111/mec.12354)
Download Catalog.tags.zip (3.742 Mb)
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When using this data, please cite the original publication:

Waples RK, Seeb LW, Seeb JE (2015) Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta). Molecular Ecology Resources 16(1):17-28. http://dx.doi.org/10.1111/1755-0998.12394

Additionally, please cite the Dryad data package:

Waples RK, Seeb LW, Seeb JE (2015) Data from: Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5b64r.2
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