Data from: Host specificity in subarctic aphids

Gibson DJ, Adamowicz SJ, Jacobs SR, Smith AM

Date Published: January 3, 2018

DOI: https://doi.org/10.5061/dryad.5ds70

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Title Aphid data
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Description Accession, collection and sequence data for the aphids associated with this publication. Data http://dx.doi.org/10.5883/DS-ASAPH
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Title Plant data associated with this manuscript.
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Description Accession, collection and sequence data for the plant species used in this manuscript. Public data originally derived from https://dx.doi.org/10.1186%2F1472-6785-12-25
Download Plant data.xlsx (31.23 Kb)
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Title Plant tree (all) Mar 11
Downloaded 4 times
Description To create a phylogeny of locally occurring plants in Churchill, we used the existing DNA barcode library derived from the majority of the vascular plants of Churchill (Kuzmina et al. 2012) (Supp. Appendix 1). Each plant species targeted in our study had three DNA barcode gene regions (ITS2, rbcLa, and matK; Hollingsworth et al. 2009) represented with the exception of Larix laricina, which lacked a matK sequence. For each plant species, and each gene region, the highest quality sequence (longest sequence containing the lowest number of ambiguous bases) was selected. The three genes were concatenated using FaBox (Villesen 2007), and the resulting contiguous sequence was used to create a Maximum-Likelihood tree (500 bootstrap replicates) in MEGA6.
Download Plant tree (all) Mar 11.nwk (455 bytes)
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Title aphid tree 1000 bootstrap GTR tree consensus
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Download aphid tree 1000 bootstrap GTR tree consensus.nwk (374 bytes)
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When using this data, please cite the original publication:

Gibson DJ, Adamowicz SJ, Jacobs SR, Smith AM (2017) Host specificity in subarctic aphids. Environmental Entomology, online in advance of print. https://doi.org/10.1093/ee/nvx176

Additionally, please cite the Dryad data package:

Gibson DJ, Adamowicz SJ, Jacobs SR, Smith AM (2017) Data from: Host specificity in subarctic aphids. Dryad Digital Repository. https://doi.org/10.5061/dryad.5ds70
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