Data from: The global antigenic diversity of swine influenza A viruses

Lewis NS, Russell CA, Anderson TK, Berger K, Burke DF, Fonville JM, Fouchier RAM, Kellam P, Koel BF, Nguyen T, Nuansrichy B, Peiris JSM, Saito T, Simon G, Skepner E, Takemae N, ESNIP3 consortium, Webby RJ, van Reeth K, Brookes SM, Larsen L, Brown IH, Vincent AL, Langat P, Bielejec F, Lemey P, Watson SJ, Dudas G

Date Published: May 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.5ff80

 

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Title Figure 1. Source data 1
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Description Figure 1. Source data 1 - Input and output text files containing all H1 and H3 virus data used in Figure 1, Figure1 Supplemental 1,2,3, files
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Title Figure 2. Source data 2
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Description Figure 2. Source data 2 - Input and output text files used to calculate H1 and H3 comparative rates of antigenic evolution and diversity shown in Figure 2 and Supplementary File 3_ Table 3
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Title Supplemental Table 1. Source Data
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Description Supplemental Table 1. Source Data - Text files and plots of summary statistics of testing in 1, 2, 3, 4 and 5 dimensions
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Title Supplemental Table 2. Source data
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Description Supplemental Table 2.Source data Text infiles, phylogenetic trees and source script for antigenic distance analyses
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Title Figure 1A
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Description gif files for rotational views of 3D antigenic maps in Figure 1
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Title Figure 1B
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Description gif files for rotational views of 3D antigenic maps in Figure 1
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Title Figure 1C
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Description gif files for rotational views of 3D antigenic maps in Figure 1
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Title Figure 1D
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Description gif files for rotational views of 3D antigenic maps in Figure 1
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When using this data, please cite the original publication:

Lewis NS, Russell CA, Langat P, Anderson TK, Berger K, Bielejec F, Burke DF, Dudas G, Fonville JM, Fouchier RAM, Kellam P, Koel BF, Lemey P, Nguyen T, Nuansrichy B, Peiris JSM, Saito T, Simon G, Skepner E, Takemae N, ESNIP3 consortium, Webby RJ, van Reeth K, Brookes SM, Larsen L, Watson SJ, Brown IH, Vincent AL (2016) The global antigenic diversity of swine influenza A viruses. eLife 5: e12217. http://dx.doi.org/10.7554/eLife.12217

Additionally, please cite the Dryad data package:

Lewis NS, Russell CA, Anderson TK, Berger K, Burke DF, Fonville JM, Fouchier RAM, Kellam P, Koel BF, Nguyen T, Nuansrichy B, Peiris JSM, Saito T, Simon G, Skepner E, Takemae N, ESNIP3 consortium, Webby RJ, van Reeth K, Brookes SM, Larsen L, Brown IH, Vincent AL, Langat P, Bielejec F, Lemey P, Watson SJ, Dudas G (2016) Data from: The global antigenic diversity of swine influenza A viruses. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5ff80
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