Data from: De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome

Szövényi P, Perroud P, Symeonidi A, Stevenson S, Quatrano RS, Rensing SA, Cuming AC, McDaniel SF

Date Published: June 3, 2014

DOI: http://dx.doi.org/10.5061/dryad.5fm82

 

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Title Assembled GG1 transcripts
Downloaded 131 times
Description We assembled quality filtered and trimmed 454 reads with Newbler for the GG1 strain.
Download GG1_454Isotigs.zip (11.63 Mb)
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Title Assembled R40 transcripts
Downloaded 49 times
Description We assembled quality filtered and trimmed 454 reads with Newbler for the R40 strain.
Download R40_454Isotigs.zip (9.223 Mb)
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Title Protein translation of predicted ORFs for the GG1 transcripts
Downloaded 52 times
Description Protein translations of the predicted ORFs for the GG1 transcripts. We selected the longest ORF prediction for each transcript. The three numbers in the fasta header refer to the frame, the starting and the end coordinates of the predicted ORF on the original transcript sequences.
Download GG1_predicted_PROT.zip (4.269 Mb)
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Title Protein translation of predicted ORFs for the R40 transcripts
Downloaded 42 times
Description Protein translations of the predicted ORFs for the R40 transcripts. We selected the longest ORF prediction for each transcript. The three numbers in the fasta header refer to the frame, the starting and the end coordinates of the predicted ORF on the original transcript sequences.
Download R40_predicted_PROT.zip (3.659 Mb)
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Title Predicted ORFs for the GG1 transcripts
Downloaded 49 times
Description Predicted ORFs for the GG1 transcripts. We selected the longest ORF prediction for each transcript.
Download GG1_predicted_CDS.zip (5.826 Mb)
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Title Predicted ORFs for the R40 transcripts
Downloaded 41 times
Description Predicted ORFs for the R40 transcripts. We selected the longest ORF prediction for each transcript.
Download R40_predicted_CDS.zip (4.993 Mb)
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Title Top blast hits of GG1 transcripts in the NCBI nr data base
Downloaded 43 times
Description Top blast hit of each GG1 transcript in the NCBI nr data base using BlastX (e-value threshold 10-3).
Download Table_S1.xlsx (2.478 Mb)
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Title Top blast hits of R40 transcripts in the NCBI nr data base
Downloaded 43 times
Description Top blast hit of each R40 transcript in the NCBI nr data base using BlastX (e-value threshold 10-3).
Download Table_S2.zip (2.077 Mb)
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Title GO annotation of GG1 transcripts
Downloaded 56 times
Description GO annotation of GG1 transcripts
Download Table_S3.zip (1.688 Mb)
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Title GO annotation of R40 transcripts
Downloaded 48 times
Description GO annotation of R40 transcripts
Download Table_S4.zip (1.489 Mb)
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Title Interproscan analysis of GG1 transcripts
Downloaded 43 times
Description Interproscan analysis of GG1 transcripts
Download Table_S5.zip (2.967 Mb)
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Title Interproscan analysis of R40 transcripts
Downloaded 41 times
Description Interproscan analysis of R40 transcripts
Download Table_S6.zip (2.846 Mb)
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When using this data, please cite the original publication:

Szövényi P, Perroud P, Symeonidi A, Stevenson S, Quatrano RS, Rensing SA, Cuming AC, McDaniel SF (2015) De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome. Molecular Ecology Resources 15(1): 203-215. http://dx.doi.org/10.1111/1755-0998.12284

Additionally, please cite the Dryad data package:

Szövényi P, Perroud P, Symeonidi A, Stevenson S, Quatrano RS, Rensing SA, Cuming AC, McDaniel SF (2014) Data from: De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5fm82
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