Data from: Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients

Tangedal S, Aanerud M, Grønseth R, Drengenes C, Wiker HG, Bakke PS, Eagan T

Date Published: August 31, 2017

DOI: https://doi.org/10.5061/dryad.5gc82

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Title COPDindspon_mapping_DRYAD
Downloaded 9 times
Description Metadatafile for Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients, allowing rerun of analysis.
Download COPDindspon_mapping_DRYAD.txt (29.12 Kb)
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Title COPDindspon_commands_DRYAD
Downloaded 4 times
Description Command file for correct sample selection and creation of sub populations as in article: Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients.
Download COPDindspon_commands_DRYAD.txt (1.243 Kb)
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Title uc_fast_params
Downloaded 13 times
Description Parameter file necessary for OTU-picking.
Download uc_fast_params.txt (39 bytes)
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Title COPD_BERGEN_Fastq175
Downloaded 10 times
Description Resulting Illumina fastq files from 175 sputum samples collected as part of the Bergen COPD Cohort Study (BCCS) and its adjunct Bergen COPD Exacerbation Study (BCES).
Download COPD_BERGEN_Fastq175.zip (1.553 Gb)
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When using this data, please cite the original publication:

Tangedal S, Aanerud M, Grønseth R, Drengenes C, Wiker HG, Bakke PS, Eagan T. (2017) Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients. Respiratory Research 18:164. https://doi.org/10.1186/s12931-017-0645-3

Additionally, please cite the Dryad data package:

Tangedal S, Aanerud M, Grønseth R, Drengenes C, Wiker HG, Bakke PS, Eagan T (2017) Data from: Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients. Dryad Digital Repository. https://doi.org/10.5061/dryad.5gc82
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