Data from: Genome-wide tests for introgression between cactophilic Drosophila implicate a role of inversions during speciation

Lohse K, Clarke M, Ritchie MG, Etges WJ

Date Published: March 19, 2015

DOI: http://dx.doi.org/10.5061/dryad.5jq6p

 

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Title Dryad_data_2015
Downloaded 9 times
Description The folder contains .txt files of counts of divergent sites between D. arizonae and D. mojavensis in 250 and 500 bp blocks of intergenic sequence. These are the input files (readable with the Mathematica function ReadList[]) for fitting the IIM model using an analytic expression for the likelihood derived by Wilkinson-Herbots (2012). For details see Methods in Lohse et al (2015). Each block is summarized as a nested list {{S_div, S_het}, total length, pos}. The four entries are: S_div: Number of divergent sites S_het: Number of heterozygous sites in both species total length: Total physical length of the block in the Dmoj reference genome including sites that did not pass filtering. pos: Position on the scaffold (mean position of all called sites) Blocks containing heterozygous sites or a physical length > 2x the number of called sites were not used in the analysis.
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When using this data, please cite the original publication:

Lohse K, Clarke M, Ritchie MG, Etges WJ (2015) Genome-wide tests for introgression between cactophilic Drosophila implicate a role of inversions during speciation. Evolution 69(5): 1178–1190. http://dx.doi.org/10.1111/evo.12650

Additionally, please cite the Dryad data package:

Lohse K, Clarke M, Ritchie MG, Etges WJ (2015) Data from: Genome-wide tests for introgression between cactophilic Drosophila implicate a role of inversions during speciation. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5jq6p
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