Data from: Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks

Lonardoni D, Amin H, Di Marco S, Maccione A, Berdondini L, Nieus T

Date Published: August 30, 2017

DOI: https://doi.org/10.5061/dryad.5k67r

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Title network_model_NEURON
Downloaded 19 times
Description Package containing Python and NEURON code used for simulations. Remember to compile .mod file <sh nrnCompiler.sh>. The code requires a community detection module available at https://bitbucket.org/taynaud/python-louvain. Up to date versions can be found at https://github.com/dlonardoni/Cell-Culture-Model.
Download PLoScode_networkmodel.zip (8.373 Mb)
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Title Spontaneous spiking activity recordings
Downloaded 15 times
Description The data consist of the spiking activity of hippocampal cell cultures recorded with the high density 4096 electrodes MEA device. File format: Each file contains a matrix made two rows and N columns (N is the number of spikes). The second row corresponds to the time stamps of the spiking activity and the first one to the corresponding electrode ID (numbered from 1 - top left of the recording matrix - to 4096 - bottom right of the recording matrix).
Download SPONT_recordings.zip (23.99 Mb)
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Title BIC_recordings
Downloaded 17 times
Description The data consist of the spiking activity of hippocampal cell cultures recorded with the high density 4096 electrodes MEA device. The following protocol was repeated for each chip 1. control: spontaneous activity is recorded 4. APV: spontaneous activity is recorded under APV. File format: Each file contains a matrix made two rows and N columns (N is the number of spikes). The second row corresponds to the time stamps of the spiking activity and the first one to the corresponding electrode ID (numbered from 1 - top left of the recording matrix - to 4096 - bottom right of the recording matrix).
Download BIC_recordings.zip (21.94 Mb)
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Title APV recordings
Downloaded 15 times
Description The data consist of the spiking activity of hippocampal cell cultures recorded with the high density 4096 electrodes MEA device. The following protocol was repeated for each chip 1. control: spontaneous activity is recorded 4. bicuculline: spontaneous activity is recorded under bicuculline. File format: Each file contains a matrix made two rows and N columns (N is the number of spikes). The second row corresponds to the time stamps of the spiking activity and the first one to the corresponding electrode ID (numbered from 1 - top left of the recording matrix - to 4096 - bottom right of the recording matrix).
Download APV_recordings.zip (3.249 Mb)
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When using this data, please cite the original publication:

Lonardoni D, Amin H, Di Marco S, Maccione A, Berdondini L, Nieus T (2017) Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks. PLOS Computational Biology 13(7): e1005672. https://doi.org/10.1371/journal.pcbi.1005672

Additionally, please cite the Dryad data package:

Lonardoni D, Amin H, Di Marco S, Maccione A, Berdondini L, Nieus T (2017) Data from: Recurrently connected and localized neuronal communities initiate coordinated spontaneous activity in neuronal networks. Dryad Digital Repository. https://doi.org/10.5061/dryad.5k67r
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