Data from: Evidence for an active rare biosphere within freshwater protists community

Debroas D, Hugoni M, Domaizon I

Date Published: February 17, 2015

DOI: http://dx.doi.org/10.5061/dryad.5mv53

 

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Title Clean pyrosequencing data
Downloaded 11 times
Description These sequences were checked against the following quality criteria: (i) no Ns, (ii) quality score ≥ 23 according to the PANGEA process (Giongo et al., 2010), (iii) a minimum sequence length of 200 bp, and (iv) no sequencing error in the forward primer. The scripts used were quality.pl and preprocess.pl implemented in the pipeline PANAM (http://code.google.com/p/panam-phylogenetic-annotation /downloads /list) described more in detail in the related paper (Taib et al. 2013).
Download pooled_sample_Seq.fasta (141.3 Mb)
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Title Table1_data
Downloaded 7 times
Description Similarity and phylogenetic indices determined for each phylogenetic units (PUs) presented in the table 1
Download Table1_data.csv (41.95 Kb)
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Title Phylogeny_fasttree_files
Downloaded 34 times
Description This compressed file aggregates the FastTree files (newick format) generated by the script panam.pl
Download Phylogeny_fasttree_files.zip (9.428 Mb)
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Title synthese_OTU_RNA_DNA
Downloaded 7 times
Description OTUs with the taxonomies, the DNA and RNA abundances (tab delimited)
Download synthese_OTU_RNA_DNA.csv (1.255 Mb)
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When using this data, please cite the original publication:

Debroas D, Hugoni M, Domaizon I (2015) Evidence for an active rare biosphere within freshwater protists community. Molecular Ecology 24(6): 1236-1247. http://dx.doi.org/10.1111/mec.13116

Additionally, please cite the Dryad data package:

Debroas D, Hugoni M, Domaizon I (2015) Data from: Evidence for an active rare biosphere within freshwater protists community. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.5mv53
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